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Related Experiment Video

Updated: Aug 31, 2025

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
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How to Use the Candida Genome Database.

Marek S Skrzypek1, Jonathan Binkley1, Gavin Sherlock2

  • 1Department of Genetics, Stanford University, Stanford, CA, USA.

Methods in Molecular Biology (Clifton, N.J.)
|August 25, 2022
PubMed
Summary
This summary is machine-generated.

The Candida Genome Database (CGD) offers comprehensive biological data for medically important Candida species. Explore gene and protein information, analyze data using GO tools, and navigate large datasets with JBrowse.

Keywords:
CandidaExpression analysisGO SlimGene ontologyGenome databaseJBrowse

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Area of Science:

  • Fungal genomics and bioinformatics
  • Medical mycology
  • Systems biology

Background:

  • Candida species are significant human pathogens.
  • Access to curated genomic and proteomic data is crucial for research.
  • Efficient data retrieval and analysis tools are needed for Candida research.

Purpose of the Study:

  • To guide users through the Candida Genome Database (CGD) interface.
  • To demonstrate how to access and analyze gene and protein information for Candida species.
  • To showcase tools for exploring genomic data and retrieving specific gene sets.

Main Methods:

  • Exploration of the CGD Home page and Locus Summary pages.
  • Utilizing Gene Ontology (GO) analysis tools: GO Term Finder and GO Slim Mapper.
  • Browsing large-scale genomic datasets with the JBrowse genome browser.
  • Employing Advanced Search and Batch Download tools for user-defined gene sets.

Main Results:

  • Demonstrated navigation of key CGD pages for data access.
  • Illustrated the application of GO analysis tools for functional annotation.
  • Showcased genome browsing capabilities and methods for retrieving custom gene lists.

Conclusions:

  • The CGD provides a user-friendly platform for accessing and analyzing Candida genomic and proteomic data.
  • Integrated tools facilitate efficient data exploration, analysis, and retrieval for researchers.
  • CGD supports advancements in understanding medically important Candida species.