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Updated: Aug 30, 2025

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Visualization of SARS-CoV-2 using Immuno RNA-Fluorescence In Situ Hybridization
Published on: December 23, 2020
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SARS-CoV-2 requires acidic pH to infect cells
Alex J B Kreutzberger1,2, Anwesha Sanyal1,2, Anand Saminathan1,2
1Department of Cell Biology, Harvard Medical School, Boston, MA 02115.
Summary
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) requires an acidic environment for cell entry and genome penetration. This acidic pH is crucial for spike protein-mediated fusion, even after key cleavages occur.
Area of Science:
- Virology
- Cell Biology
- Biochemistry
Background:
- Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) utilizes its spike (S) protein for cell entry, involving membrane attachment and fusion.
- S protein-mediated fusion is dependent on proteolytic cleavage, typically by furin and TMPRSS2, or endosomal cathepsins.
Purpose of the Study:
- To investigate the role of pH in SARS-CoV-2 cell entry and fusion.
- To elucidate the sequential steps of viral fusion and genome penetration under varying pH conditions.
Main Methods:
- Real-time three-dimensional single-virion tracking.
- Analysis of viral fusion and content release in TMPRSS2-overexpressing cells at different pH levels.
Main Results:
- SARS-CoV-2 fusion and genome penetration necessitate exposure to an acidic milieu (pH 6.2–6.8).
- Acidic pH is required for S1-fragment dissociation, fusion, and content release, even when furin and TMPRSS2 cleavages are complete.
- An acidic environment is critical for infection at the cell surface of TMPRSS2-expressing cells and within endosomal compartments.
Conclusions:
- An acidic environment plays a key role in facilitating SARS-CoV-2 cell entry.
- The findings highlight the importance of pH in viral fusion and infection mechanisms, particularly in the nasal cavity and endosomes.
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