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Updated: Aug 30, 2025

Co-immunoprecipitation Assay Using Endogenous Nuclear Proteins from Cells Cultured Under Hypoxic Conditions
Published on: August 2, 2018
ISGylation directly modifies hypoxia-inducible factor-2α and enhances its polysome association
Gaelan Melanson1, Antonia C Du Bois1, Caroline Webster1
1Department of Molecular and Cellular Biology, University of Guelph, Canada.
Interferon-stimulated gene 15 (ISG15) modifies hypoxia-inducible factors (HIFs), impacting their role in gene regulation and translation. This reveals ISG15 as a key regulator of hypoxic mRNA translation with implications for disease.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- Hypoxia-inducible factors (HIFs) are crucial for cellular adaptation to low oxygen, regulating gene expression in development and cancer.
- HIF-2α also functions as a translation factor, influencing protein synthesis.
- The ubiquitin-like modifier ISG15 plays roles in cellular responses, but its interplay with HIFs is not well understood.
Purpose of the Study:
- To investigate the regulatory relationship between ISG15 and HIF-1α/HIF-2α under hypoxia and interferon stimulation.
- To elucidate the mechanisms by which ISG15 influences HIF activity and function.
- To determine the impact of ISG15 modification on the HIF transcriptional program and mRNA translation.
Main Methods:
- Cell culture under hypoxic and interferon-induced conditions.
- Western blotting and immunoprecipitation to detect ISG15 conjugation (ISGylation) and HIF-α stabilization.
- Quantitative PCR and RNA sequencing to assess transcriptional changes.
- Analysis of protein fractions and polysome profiling to evaluate translation activity.
Main Results:
- ISG15 induction and HIF-α stabilization occur concurrently.
- Both HIF-1α and HIF-2α promote ISGylation of proteins, including the first evidence of HIF-2α ISGylation.
- ISGylation of HIFs leads to systemic alterations in the HIF transcriptional program.
- ISGylation enhances the cytoplasmic/nuclear localization and translation activity of HIF-2α.
Conclusions:
- ISG15 acts as a regulator of HIF activity, influencing both transcription and translation under hypoxic conditions.
- The ISG15-HIF interaction modulates cellular responses to hypoxia, impacting gene expression and protein synthesis.
- This crosstalk has significant implications for understanding immune responses and disease progression, particularly in cancer.
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