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Published on: April 11, 2016
Oncogene or tumor suppressor gene: An integrated pan-cancer analysis of NBPF1
Lei Li1, Sen Chen2, Yueming Tang1
1Department of Laboratory Medicine, Peking Union Medical College Hospital, Peking Union Medical College and Chinese Academy of Medical Science, Beijing, China.
Abstract:
Neuroblastoma breakpoint family, member 1 (NBPF1), appears to be a double-edged sword with regard to its role in carcinogenesis. On the one hand, the tumor-suppressing functions of NBPF1 have been definitively observed in neuroblastoma, prostate cancer, cutaneous squamous cell carcinoma, and cervical cancer. On the other hand, there is evidence that NBPF1 regulates the colony formation, invasion, and maintenance of liver cancer cells and hence functions as an oncogene. The roles of NBPF1 are strictly dependent on the biological context and type of organization. However, a systematic pan-cancer analysis has thus far not been undertaken, and the significance of NBPF1 in the occurrence and progression of many malignancies is uncertain. In this paper, bioinformatics techniques were employed to analyze NBPF1 expression across different cancers and investigate the relationship between NBPF1 and clinical features, prognosis, genetic alteration, and tumor immune microenvironment, respectively. Our results show that NBPF1 is variably expressed in distinct tumor tissues and is also closely linked to clinical outcomes. In particular, compared to other tumor types, there was a strong negative correlation between NBPF1 expression and various components of the tumor microenvironment in adrenocortical carcinoma (ACC). We thus developed an NBPF1-derived immune risk model based on NBPF1-related immune genes; ACC patients with a high-risk score tended to have a poorer prognosis, accompanied by immune hyporesponsiveness. NBPF1 can be used as a prognostic biomarker for multiple cancers. Moreover, anti-NBPF1 immunotherapy may be suitable for treating ACC patients.
Insights
Neuroblastoma breakpoint family, member 1 (NBPF1) has dual roles in cancer, acting as both a tumor suppressor and oncogene. This study reveals NBPF1 as a prognostic biomarker and suggests anti-NBPF1 immunotherapy for adrenocortical carcinoma.
Area of Science:
- Oncology
- Molecular Biology
- Bioinformatics
Background:
- The gene Neuroblastoma breakpoint family, member 1 (NBPF1) exhibits context-dependent roles in carcinogenesis, functioning as both a tumor suppressor and an oncogene.
- Previous studies have indicated NBPF1's involvement in various cancers, but a comprehensive pan-cancer analysis is lacking.
Purpose of the Study:
- To conduct a systematic pan-cancer analysis of NBPF1 expression and its correlation with clinical features, prognosis, and the tumor immune microenvironment.
- To investigate the potential of NBPF1 as a prognostic biomarker and therapeutic target, particularly in adrenocortical carcinoma (ACC).
Main Methods:
- Bioinformatics techniques were utilized to analyze NBPF1 expression across diverse cancer types.
- The study examined the relationship between NBPF1 expression and clinical outcomes, genetic alterations, and tumor immune microenvironment components.
- An NBPF1-derived immune risk model was developed using NBPF1-related immune genes.
Main Results:
- NBPF1 expression varied significantly across different tumor tissues and correlated with clinical outcomes.
- A notable negative correlation was observed between NBPF1 expression and tumor microenvironment components in adrenocortical carcinoma (ACC).
- A high-risk score from the NBPF1-derived immune risk model predicted poorer prognosis and immune hyporesponsiveness in ACC patients.
Conclusions:
- NBPF1 serves as a valuable prognostic biomarker across multiple cancer types.
- Targeting NBPF1 through immunotherapy may offer a potential treatment strategy for adrenocortical carcinoma (ACC).
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