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Updated: Aug 29, 2025

Mass Spectrometry-Guided Genome Mining as a Tool to Uncover Novel Natural Products
Published on: March 12, 2020
DNA Encoding of Natural Products.
1Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China. xuht@shanghaitech.edu.cn.
We developed a DNA-encoded natural product library (nDEL) by attaching DNA barcodes to natural products. This method simplifies leveraging complex natural products for drug discovery.
Area of Science:
- Biochemistry
- Medicinal Chemistry
- Synthetic Biology
Background:
- Natural products (NPs) are crucial in drug discovery due to their evolutionary optimization.
- DNA-encoded libraries (DELs) combine DNA barcoding with combinatorial synthesis for efficient screening.
- Current DEL methods face challenges in annotating complex natural product structures.
Purpose of the Study:
- To develop a method for DNA barcoding complex natural products.
- To create a DNA-encoded natural product library (nDEL).
- To facilitate the use of natural products in drug discovery pipelines.
Main Methods:
- Functionality-independent DNA barcoding of natural products.
- Utilizing enzymatic ligation for DNA attachment.
- Employing "split and pool" combinatorial synthesis strategies.
Main Results:
- Successful generation of a DNA-encoded natural product library (nDEL).
- Demonstrated a practical method for annotating complex NPs with DNA barcodes.
- Established a foundation for DNA-encoded natural product screening.
Conclusions:
- The developed nDEL method offers a simple and practical approach to DNA barcoding complex natural products.
- This technique enhances the utility of natural products in drug discovery.
- nDEL technology expands the scope of DEL applications to diverse chemical spaces.
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