Hcp2a of APEC affects mRNA splicing and protein quality control in DF-1 cells

Xiangjun Song1,2,3, Zhe Chen1,2, Ziqi Li1,2

  • 1Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, College of Animal Science and Technology, Anhui Agricultural University, Hefei, 230036, PR China.

BMC Veterinary Research
|September 13, 2022
PubMed
Abstract

Insights

Avian pathogenic E. coli (APEC) effector protein Hcp2a influences host cells by regulating mRNA splicing and protein quality control. This study quantifies protein changes in DF-1 cells, revealing Hcp2a

Area of Science:

  • Microbiology
  • Molecular Biology
  • Cellular Biology

Background:

  • Type VI secretion system (T6SS) effectors are crucial for bacterial pathogenesis.
  • Hcp is a key structural protein in the T6SS complex, implicated in virulence.
  • The specific role of Hcp effectors in host cell regulation by APEC remains unclear.

Purpose of the Study:

  • To investigate the regulatory function of APEC effector protein Hcp2a in host DF-1 cells.
  • To identify host proteins affected by Hcp2a overexpression using quantitative proteomics.
  • To elucidate the pathogenic mechanisms of Hcp2a.

Main Methods:

  • Tandem mass tag (TMT) analysis for quantitative proteomic profiling.
  • Overexpression of Hcp2a in DF-1 cells compared to a null group.
  • Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses.

Main Results:

  • Significant differences in host protein expression between Hcp2a overexpression and null groups.
  • 195 differentially expressed proteins (DEPs) identified (144 upregulated, 51 downregulated).
  • DEPs were primarily enriched in RNA degradation, spliceosome, and mRNA surveillance pathways.

Conclusions:

  • APEC Hcp2a effector protein significantly impacts mRNA splicing and protein quality control in host cells.
  • These findings provide insights into the pathogenic mechanisms of Hcp2a.
  • The study highlights Hcp2a's role in host-pathogen interactions.

Related Concept Videos

RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
56.7K
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
7.1K
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.6K
RNA Editing02:23

RNA Editing

RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
9.1K
Pre-mRNA Processing: RNA Splicing01:36

Pre-mRNA Processing: RNA Splicing

5.4K
Pre-mRNA Processing: Modification of pre-mRNA Ends01:35

Pre-mRNA Processing: Modification of pre-mRNA Ends

In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
9.7K