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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Clinical Risk Score to Predict Pathogenic Genotypes in Patients With Dilated Cardiomyopathy
Luis Escobar-Lopez1, Juan Pablo Ochoa2, Ana Royuela3
1Heart Failure and Inherited Cardiac Diseases Unit, Department of Cardiology, Hospital Universitario Puerta de Hierro, IDIPHISA, Madrid, Spain; CIBER Cardiovascular, Instituto de Salud Carlos III, Madrid, Spain; European Reference Network for Rare and Low Prevalence Complex Diseases of the Heart (ERN-GUARDHEART), Madrid, Spain.
Insights
A new Madrid Genotype Score accurately predicts positive genetic test results in patients with dilated cardiomyopathy (DCM) or left ventricular systolic dysfunction (LVSD). This tool aids in identifying individuals likely to benefit from genetic testing, improving clinical decision-making.
Area of Science:
- Cardiology
- Genetics
- Medical Diagnostics
Background:
- Genetic testing in nonischemic dilated cardiomyopathy (DCM) and isolated left ventricular systolic dysfunction (LVSD) aids family screening and risk stratification.
- However, a significant proportion of patients have negative genetic test results, limiting its clinical utility.
- A predictive tool is needed to optimize the selection of patients for genetic testing.
Purpose of the Study:
- To develop and externally validate a clinical score predicting the likelihood of a positive genetic test result (G+) in patients with DCM/LVSD.
- To identify key clinical, electrocardiographic, and echocardiographic variables associated with positive genetic findings.
Main Methods:
- A multivariable logistic regression model was used to identify independent predictors of G+ in 1,015 genotyped DCM/LVSD patients from Spain.
- The Madrid Genotype Score was created by summing the identified predictors.
- External validation was performed using data from 1,097 genotyped patients in the Maastricht and Trieste registries.
Main Results:
- A positive genetic test result (G+) was observed in 37% of the derivation cohort and 26% of the validation cohort.
- Independent predictors of G+ included family history of DCM, low peripheral ECG voltage, skeletal myopathy, absence of hypertension, and absence of left bundle branch block.
- The Madrid Genotype Score demonstrated good predictive accuracy, with a C-statistic of 0.74 in both internal and external validation cohorts.
Conclusions:
- The Madrid Genotype Score is a validated and accurate tool for predicting positive genetic test results in DCM/LVSD patients.
- This score can assist clinicians in identifying patients most likely to have a positive genetic test, thereby improving the efficiency and adoption of genetic testing.
Background:
Although genotyping allows family screening and influences risk-stratification in patients with nonischemic dilated cardiomyopathy (DCM) or isolated left ventricular systolic dysfunction (LVSD), its result is negative in a significant number of patients, limiting its widespread adoption.
Objectives:
This study sought to develop and externally validate a score that predicts the probability for a positive genetic test result (G+) in DCM/LVSD.
Methods:
Clinical, electrocardiogram, and echocardiographic variables were collected in 1,015 genotyped patients from Spain with DCM/LVSD. Multivariable logistic regression analysis was used to identify variables independently predicting G+, which were summed to create the Madrid Genotype Score. The external validation sample comprised 1,097 genotyped patients from the Maastricht and Trieste registries.
Results:
A G+ result was found in 377 (37%) and 289 (26%) patients from the derivation and validation cohorts, respectively. Independent predictors of a G+ result in the derivation cohort were: family history of DCM (OR: 2.29; 95% CI: 1.73-3.04; P < 0.001), low electrocardiogram voltage in peripheral leads (OR: 3.61; 95% CI: 2.38-5.49; P < 0.001), skeletal myopathy (OR: 3.42; 95% CI: 1.60-7.31; P = 0.001), absence of hypertension (OR: 2.28; 95% CI: 1.67-3.13; P < 0.001), and absence of left bundle branch block (OR: 3.58; 95% CI: 2.57-5.01; P < 0.001). A score containing these factors predicted a G+ result, ranging from 3% when all predictors were absent to 79% when ≥4 predictors were present. Internal validation provided a C-statistic of 0.74 (95% CI: 0.71-0.77) and a calibration slope of 0.94 (95% CI: 0.80-1.10). The C-statistic in the external validation cohort was 0.74 (95% CI: 0.71-0.78).
Conclusions:
The Madrid Genotype Score is an accurate tool to predict a G+ result in DCM/LVSD.
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Cardiomyopathy I: Introduction and Classification
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Cardiomyopathy V: Interprofessional Care

