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Updated: Aug 28, 2025

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
High-Level Resistance to Aminoglycosides Among Multidrug Resistant Non-faecalis and Non-faecium Enterococci
Background:
Enterococci are considered as important causative pathogens of a variety of community and hospital-acquired infections. Due to the development of multidrug resistant (MDR) enterococci and the emergence of strains possessing high-level resistance to antimicrobial agents, treatment of their infections has been more complicated. In addition to more prevalent species of the Enterococcus genus, non-faecalis/non-faecium species are also responsible for severe healthcare-associated infections. Therefore, this study was designed to investigate high-level gentamicin resistance among the clinical isolates of non-faecalis and non-faecium enterococci in Shiraz, in the southwest of Iran.
Methods:
A total of 28 non-faecalis/non-faecium spp. were isolated from various infections. They were identified by the conventional methods. Antimicrobial resistance patterns, multidrug resistance, and high-level gentamicin resistance were determined, according to CLSI guidelines and related definitions. Detection of aminoglycoside resistance genes was also performed using standard procedures.
Results:
All of the isolates were MDR (100%), and 75% of them were high-level gentamicin resistant (HLGR) (MIC ≥ 500 μg/mL). The distributions of aac(6')-Ie-aph(2'')-Ia and aph(3')-IIIa resistance genes were 82.1% and 75%, respectively. The aph(2")-Ib, aph(2")-Ic, aph(2")-Id, and ant(4')-Ia genes were not found in any isolate. Although vancomycin resistance was observed in 19 (67.8%) isolates, all of the isolates were susceptible to linezolid and fosfomycin.
Conclusions:
Our data indicate a high rate of MDR non-faecalis/non-faecium isolates. Furthermore, high-level gentamicin resistance was notable and all of the HLGR isolates harbored at least one of aac(6')-Ie-aph(2'')-Ia or aph(3')-IIIa resistance gene.
Insights
Multidrug-resistant (MDR) non-faecalis/non-faecium enterococci show high rates of high-level gentamicin resistance (HLGR). Specific aminoglycoside resistance genes, aac(6')-Ie-aph(2'')-Ia and aph(3')-IIIa, were prevalent in HLGR strains.
Area of Science:
- Clinical microbiology
- Antimicrobial resistance
- Infectious diseases
Background:
- Enterococci are significant pathogens in community and hospital-acquired infections.
- Increasing multidrug resistance (MDR) and high-level gentamicin resistance (HLGR) complicate treatment.
- Non-faecalis/non-faecium species contribute to severe healthcare-associated infections.
Purpose of the Study:
- To investigate high-level gentamicin resistance (HLGR) in clinical isolates of non-faecalis and non-faecium enterococci.
- To determine antimicrobial resistance patterns and identify resistance genes in these isolates.
Main Methods:
- Isolation and identification of 28 non-faecalis/non-faecium enterococcal strains using conventional methods.
- Determination of antimicrobial resistance, MDR, and HLGR according to CLSI guidelines.
- Detection of aminoglycoside resistance genes via standard molecular procedures.
Main Results:
- All isolates exhibited MDR (100%), and 75% displayed HLGR (MIC ≥ 500 μg/mL).
- The aac(6 extprime)-Ie-aph(2 extprime extprime)-Ia and aph(3 extprime)-IIIa genes were found in 82.1% and 75% of isolates, respectively.
- Vancomycin resistance was present in 67.8% of isolates; however, all remained susceptible to linezolid and fosfomycin.
Conclusions:
- A high prevalence of MDR non-faecalis/non-faecium enterococci was observed.
- High-level gentamicin resistance is a significant concern in these isolates.
- The aac(6 extprime)-Ie-aph(2 extprime extprime)-Ia or aph(3 extprime)-IIIa genes were present in all HLGR isolates, indicating their role in gentamicin resistance.
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