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In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
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Among all the organelles in an animal cell, only mitochondria have their own independent genomes. Animal mitochondrial DNA is a double-stranded, closed-circular molecule with around 20,000 base pairs. Mitochondrial DNA is unique in that one of its two strands, the heavy, or H, -strand is guanine rich, whereas the complementary strand is cytosine rich and called the light, or L, -strand. Compared to nuclear DNA, mitochondrial DNA has a very low percentage of non-coding regions and is marked by...
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An Integrated Approach for Microprotein Identification and Sequence Analysis
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Emerging functions of mitochondria-encoded noncoding RNAs.

Bingbing Ren1, Min-Xin Guan2, Tianhua Zhou3

  • 1Department of Pulmonary and Critical Care Medicine, Regional Medical Center for National Institute of Respiratory Disease, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou 310016, China; Cancer Center, Zhejiang University, Hangzhou 310058, China; Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou 310016, China.

Trends in Genetics : TIG
|September 22, 2022
PubMed
Summary

Mitochondria contain their own DNA and produce noncoding RNA molecules that may regulate cellular functions. Recent studies have identified new types of mitochondria-encoded noncoding RNAs, including circular and double-stranded RNAs. These molecules appear to play roles in cellular physiology and may be linked to human diseases. Researchers are using new technologies to study how these RNAs are made and what functions they serve. The field is still developing, and more research is needed to understand their full impact on health and disease.

Keywords:
mecciRNAmitochondrial dysfunctionmitosRNAmt-lncRNAnoncoding RNAmt-ncRNA functionmitochondrial noncoding RNAmecciRNA biogenesisRNA sequencing in mitochondria

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Area of Science:

  • Molecular genetics within cell biology
  • RNA biology in biomedical research
  • Mitochondrial function in metabolic medicine

Background:

Prior research has shown that mitochondria contain circular DNA and produce essential proteins for energy metabolism. However, the role of noncoding RNA species within mitochondria remains poorly understood. No prior work had resolved the full scope of mt-ncRNA diversity or their biological functions. This gap motivated recent investigations into novel classes of mt-ncRNAs. It was already known that mitochondria contribute to cellular homeostasis, but the regulatory potential of mt-encoded noncoding RNAs had not been fully explored. Recent findings suggest that mt-ncRNAs may influence cellular physiology and disease processes. That uncertainty drove the need to synthesize current evidence on mt-ncRNA biogenesis and regulation. The field is now seeking to clarify how these molecules contribute to health and disease.

Purpose Of The Study:

This review aims to summarize recent discoveries about mitochondria-encoded noncoding RNAs. The specific problem is understanding the expression, function, and potential roles of mt-ncRNAs in cellular processes. The motivation comes from the lack of comprehensive analysis of these molecules. The authors propose to synthesize findings on mt-ncRNA biogenesis and regulation. They also seek to highlight technological advances in studying these RNAs. The goal is to clarify how mt-ncRNAs may contribute to human diseases. The review focuses on mecciRNAs and mt-dsRNAs as novel subtypes. It also addresses challenges in studying these molecules and their biomedical relevance.

Main Methods:

The authors employed a systematic literature review approach to gather recent findings on mt-ncRNAs. They analyzed studies on mt-ncRNA expression patterns and biogenesis mechanisms. The review included data on metabolism and regulatory roles of these molecules. They examined evidence linking mt-ncRNAs to cellular physiology and disease. The methodology also involved assessing technological developments in RNA sequencing and detection. The authors synthesized findings from multiple independent studies. They compared mecciRNAs and mt-dsRNAs based on current evidence. The review approach focused on summarizing key findings from the literature.

Main Results:

The strongest finding is the discovery of novel mt-ncRNA subtypes like mecciRNAs and mt-dsRNAs. These molecules are expressed in specific cellular contexts and tissues. Some mt-ncRNAs are associated with human diseases, suggesting potential roles in pathogenesis. Their biogenesis involves cleavage and processing of mitochondrial transcripts. Metabolic pathways for mt-ncRNA turnover remain poorly characterized. Regulatory roles include interactions with nuclear-encoded genes and proteins. Functional mechanisms suggest that mt-ncRNAs may modulate gene expression and signaling. The review highlights the need for further investigation into these molecules.

Conclusions:

The authors synthesize evidence that mt-ncRNAs play regulatory roles in cellular physiology. They propose that these molecules may contribute to disease mechanisms in some contexts. The review suggests that mecciRNAs and mt-dsRNAs are novel classes with distinct functions. The authors highlight the importance of developing better detection and analysis tools. They emphasize the need for more research on mt-ncRNA metabolism and regulation. The review also points to challenges in studying these molecules due to technical limitations. Future work should focus on understanding the full functional scope of mt-ncRNAs. The synthesis suggests that these molecules may have biomedical applications in disease contexts.

mt-ncRNAs are RNA molecules encoded by mitochondrial DNA that do not translate into proteins but may regulate cellular processes.

mecciRNAs are mitochondria-encoded circular RNAs, while mt-dsRNAs are mitochondria-encoded double-stranded RNAs, both recently identified as novel mt-ncRNA subtypes.

Understanding mt-ncRNA biogenesis helps clarify how these molecules are produced and regulated, which is crucial for assessing their functional roles.

Advanced RNA sequencing and detection technologies are used to identify and characterize mt-ncRNAs in cellular and disease contexts.

Some mt-ncRNAs are associated with human diseases, suggesting they may act as causal or contributing factors in disease mechanisms.

Future work should focus on understanding mt-ncRNA metabolism, regulation, and their potential roles in disease and therapeutic applications.