Related Experiment Video
Updated: Jul 11, 2026

11:03
High-resolution In Vivo Manual Segmentation Protocol for Human Hippocampal Subfields Using 3T Magnetic Resonance Imaging
Published on: November 10, 2015
9.4K
Multi-atlas thalamic nuclei segmentation on standard T1-weighed MRI with application to normal aging
Adolf Pfefferbaum1,2, Edith V Sullivan2, Natalie M Zahr1,2
1Center for Health Sciences, SRI International, Menlo Park, California, USA.
Human Brain Mapping
|October 1, 2022
Summary
This study validates a new method for segmenting thalamic nuclei using standard MRI scans, revealing age-related volume declines and linking specific nuclei to motor function. The THalamus Optimized Multi-Atlas Segmentation (THOMAS) tool is effective for analyzing brain aging.
Area of Science:
- Neuroimaging
- Human Brain Anatomy
- Aging Research
Background:
- Thalamic nuclei are crucial in aging and neurodegeneration, but automated segmentation methods are limited.
- Accurate segmentation is needed to study age-related changes and their functional impact.
Purpose of the Study:
- To validate a modified THalamus Optimized Multi-Atlas Segmentation (THOMAS) method for thalamic nuclei segmentation using standard T1 MRI.
- To quantify age-related volume changes in thalamic nuclei.
- To assess the functional relevance of thalamic nuclei volumes by correlating them with motor test performance.
Main Methods:
- A modified THOMAS algorithm was used to segment 22 unilateral thalamic nuclei from T1 MRI data.
- Validation involved comparing THOMAS segmentations from T1 MRI with white-matter-nulled (WMn) MRI data.
- Age- and sex-related volume changes were analyzed in a large cohort (N=238, ages 20-86), and correlations with Grooved Pegboard test scores were computed.
Main Results:
- THOMAS segmentation on standard T1 MRI showed strong agreement with WMn MRI data, particularly for larger nuclei.
- Significant age-related volume declines were observed in 20 of 22 unilateral thalamic nuclei and the whole thalamus, after adjusting for supratentorial intracranial volume (sICV).
- Specific thalamic regions (Posterior, Ventral) and nuclei (Ventral Anterior/Pulvinar) correlated with better eye-hand coordination performance.
Conclusions:
- The modified THOMAS method is robust for segmenting thalamic nuclei using standard T1 MRI data.
- This method enables reliable quantification of age-related thalamic volume changes.
- Thalamic nuclei volumes are functionally relevant, showing associations with motor task performance.

