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Updated: Aug 26, 2025

Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress
Published on: July 29, 2022
First insight into the development of a new transcriptomic tool in French Corsica harbors
Marion Pillet1, K Garrett Evensen2, Michel Marengo3
1STAtion de REcherches Sous-marines et Océanographiques, Punta Revellata, 20260 Calvi, France; LIttoral ENvironnement et Sociétés (UMR7266 CNRS), La Rochelle Université, 2 rue Olympe de Gouges, 17000 La Rochelle, France.
Abstract:
Coastal harbor areas are subjected to a myriad of contamination sources with largely unknown effects. Such complex chemical mixtures are difficult to monitor but transcriptomics is a promising approach for such biomonitoring. The present study was designed to verify the use of the Coastal Biosensor for Endocrine Disruption (C-BED) assay, previously developed to detect emerging contaminants and their effects on Mytilus edulis, on another mussel species, Mytilus galloprovincialis. Mussels were caged on St-Florent harbor (contaminated) and on Revellata Bay (reference) for three months. A classical multibiomarkers approach was coupled to the C-BED assay. The results of both approaches were analysed using the Integrated Biomarkers Responses (IBR) and compared to each other. Both approaches demonstrated a higher contamination and probable endocrine disruption of mussels in St-Florent, compared to the reference station. These results confirm that the C-BED assay provides an innovative method to expand our ability to detect emerging contaminants.
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