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Updated: Aug 26, 2025

Matrix-based DNA Extraction for Targeted Next-Generation Sequencing on Decontaminated Sputum Samples
Published on: June 6, 2025
Application of metagenomic next-generation sequencing in cutaneous tuberculosis
Min Kong1,2, Wei Li1, Qingsheng Kong2
1Affiliated Hospital of Jining Medical University, Jining Medical University, Jining, China.
Insights
Cutaneous tuberculosis (TB) is a rare skin wound infection. Metagenomic next-generation sequencing (mNGS) aided in diagnosing a child
Area of Science:
- Infectious Diseases
- Dermatology
- Microbiology
Background:
- Cutaneous tuberculosis (TB) is an uncommon manifestation of Mycobacterium tuberculosis complex (MTBC) infection.
- Diagnosis can be challenging, especially in pediatric cases presenting solely with a wound.
- Early and accurate identification of the causative pathogen is crucial for effective treatment.
Purpose of the Study:
- To report a case of pediatric cutaneous tuberculosis presenting as a persistent wound infection.
- To highlight the utility of metagenomic next-generation sequencing (mNGS) in diagnosing rare infectious diseases.
- To emphasize the importance of considering extrapulmonary TB in challenging wound cases.
Main Methods:
- Clinical case presentation of a child with a non-healing wrist wound.
- Initial surgical debridement and standard laboratory investigations.
- Metagenomic next-generation sequencing (mNGS) of wound secretions for pathogen identification.
Main Results:
- Standard laboratory tests were unremarkable.
- mNGS of wound secretions detected three reads belonging to the Mycobacterium tuberculosis complex (MTBC).
- Diagnosis of cutaneous tuberculosis was confirmed, and the wound resolved following anti-TB drug administration.
Conclusions:
- Cutaneous tuberculosis should be considered in the differential diagnosis of non-healing, swollen, and painful wounds, particularly in children.
- mNGS is a valuable tool for identifying pathogens in complex or rare infectious conditions, facilitating timely treatment.
- Prompt diagnosis and targeted therapy for extrapulmonary MTBC infections significantly improve patient outcomes.
Abstract:
Tuberculous infection in a skin wound is a rare but well-known condition. This study describes a child infected with tuberculosis after being wounded. Because of swelling and pain in his wrist tissue, he was admitted to the Affiliated Hospital of Jining Medical University of Shandong Province on 16 October 2021. His medical history only included a wound. He was discharged after debridement. The laboratory data were normal. Two months after surgery, his wound was still swollen and painful. Secretions from the wound were sent for metagenomic next-generation sequencing (mNGS), which revealed three reads related to the Mycobacterium tuberculosis complex group (MTBC). A diagnosis of cutaneous tuberculosis (TB) was made. The wound disappeared after anti-TB drugs were administered. This case demonstrates that, while TB presenting as a severe cutaneous wound is rare, it should be considered in the clinical diagnosis. Clinicians should also pay attention to extrapulmonary infection with MTBC in patients, particularly in some long-suffering patients, and identify the specific pathogen as soon as possible. mNGS could help to identify pathogens and facilitate early treatment, thereby improving the prognosis.
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