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Transcriptomics and RNA-Based Therapeutics as Potential Approaches to Manage SARS-CoV-2 Infection
Cristian Arriaga-Canon1, Laura Contreras-Espinosa1, Rosa Rebollar-Vega2
1Unidad de Investigación Biomédica en Cáncer, Instituto Nacional de Cancerología-Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México (UNAM), Avenida San Fernando No. 22 ColC. Sección XVI, Tlalpan. C.P., Mexico City 14080, Mexico.
Abstract:
SARS-CoV-2 is a coronavirus family member that appeared in China in December 2019 and caused the disease called COVID-19, which was declared a pandemic in 2020 by the World Health Organization. In recent months, great efforts have been made in the field of basic and clinical research to understand the biology and infection processes of SARS-CoV-2. In particular, transcriptome analysis has contributed to generating new knowledge of the viral sequences and intracellular signaling pathways that regulate the infection and pathogenesis of SARS-CoV-2, generating new information about its biology. Furthermore, transcriptomics approaches including spatial transcriptomics, single-cell transcriptomics and direct RNA sequencing have been used for clinical applications in monitoring, detection, diagnosis, and treatment to generate new clinical predictive models for SARS-CoV-2. Consequently, RNA-based therapeutics and their relationship with SARS-CoV-2 have emerged as promising strategies to battle the SARS-CoV-2 pandemic with the assistance of novel approaches such as CRISPR-CAS, ASOs, and siRNA systems. Lastly, we discuss the importance of precision public health in the management of patients infected with SARS-CoV-2 and establish that the fusion of transcriptomics, RNA-based therapeutics, and precision public health will allow a linkage for developing health systems that facilitate the acquisition of relevant clinical strategies for rapid decision making to assist in the management and treatment of the SARS-CoV-2-infected population to combat this global public health problem.
Insights
Transcriptome analysis offers new insights into SARS-CoV-2 biology and infection. Combining transcriptomics, RNA therapeutics, and precision public health aids COVID-19 management and treatment.
Area of Science:
- Virology
- Genomics
- Public Health
Background:
- Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) emerged in late 2019, causing the COVID-19 pandemic.
- Understanding SARS-CoV-2 biology and pathogenesis is crucial for effective pandemic response.
Purpose of the Study:
- To review the role of transcriptomics in advancing SARS-CoV-2 research.
- To explore the potential of RNA-based therapeutics and precision public health in managing COVID-19.
Main Methods:
- Transcriptome analysis, including spatial and single-cell transcriptomics, and direct RNA sequencing.
- Review of RNA-based therapeutic strategies (CRISPR-CAS, ASOs, siRNA).
- Discussion of precision public health principles.
Main Results:
- Transcriptomics provides novel insights into viral sequences and host-pathogen interactions.
- Advanced transcriptomic approaches aid in SARS-CoV-2 detection, diagnosis, and treatment modeling.
- RNA therapeutics show promise for combating SARS-CoV-2.
Conclusions:
- Integrating transcriptomics, RNA therapeutics, and precision public health can enhance healthcare systems.
- This integrated approach facilitates rapid clinical decision-making for managing SARS-CoV-2 infections.
- A unified strategy is essential for addressing the global public health challenge of COVID-19.
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