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Published on: September 7, 2017
Diverse Roles for a Conserved DNA-Methyltransferase in the Entomopathogenic Bacterium Xenorhabdus
Nadège Ginibre1, Ludovic Legrand2, Victoria Bientz1
1DGIMI, INRAE, Université de Montpellier, 34090 Montpellier, France.
Abstract:
In bacteria, DNA-methyltransferase are responsible for DNA methylation of specific motifs in the genome. This methylation usually occurs at a very high rate. In the present study, we studied the MTases encoding genes found in the entomopathogenic bacteria Xenorhabdus. Only one persistent MTase was identified in the various species of this genus. This MTase, also broadly conserved in numerous Gram-negative bacteria, is called Dam: DNA-adenine MTase. Methylome analysis confirmed that the GATC motifs recognized by Dam were methylated at a rate of >99% in the studied strains. The observed enrichment of unmethylated motifs in putative promoter regions of the X. nematophila F1 strain suggests the possibility of epigenetic regulations. The overexpression of the Dam MTase responsible for additional motifs to be methylated was associated with impairment of two major phenotypes: motility, caused by a downregulation of flagellar genes, and hemolysis. However, our results suggest that dam overexpression did not modify the virulence properties of X. nematophila. This study increases the knowledge on the diverse roles played by MTases in bacteria.
Insights
This study identifies the Dam DNA-adenine methyltransferase (MTase) in Xenorhabdus bacteria, finding it highly conserved and responsible for GATC motif methylation. Dam overexpression impacts motility and hemolysis but not virulence.
Area of Science:
- Bacteriology
- Molecular Biology
- Epigenetics
Background:
- DNA methylation is crucial in bacteria, mediated by DNA methyltransferases (MTases).
- The entomopathogenic bacteria Xenorhabdus genus was investigated for MTase encoding genes.
Purpose of the Study:
- To identify and characterize MTases in Xenorhabdus species.
- To investigate the function and impact of Dam DNA-adenine MTase (Dam MTase) on bacterial phenotypes.
Main Methods:
- Bioinformatic analysis to identify MTase genes.
- Methylome analysis to determine Dam MTase target sites (GATC motifs).
- Gene overexpression studies to assess phenotypic changes.
Main Results:
- A single conserved MTase, Dam DNA-adenine MTase, was identified across Xenorhabdus species.
- Dam MTase methylated GATC motifs at >99% in studied strains, with unmethylated motifs in promoter regions suggesting epigenetic regulation.
- Overexpression of Dam MTase impaired motility (via flagellar gene downregulation) and hemolysis, but did not affect virulence.
Conclusions:
- Dam MTase plays a significant role in regulating bacterial gene expression and phenotypes beyond simple methylation.
- The findings contribute to understanding the diverse functions of MTases in bacterial biology and epigenetics.
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