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Single Nucleus RNA-sequencing Reveals Altered Intercellular Communication and Dendritic Cell Activation in
Christina J Codden1, Amy Larson1, Junya Awata1
1Molecular Cardiology Research Institute, Tufts Medical Center, Boston, MA, USA.
Insights
Single nucleus RNA sequencing reveals cellular communication changes in end-stage hypertrophic cardiomyopathy (HCM). These findings highlight altered extracellular matrix interactions and signaling pathways, offering potential therapeutic targets for this intractable heart condition.
Area of Science:
- Cardiovascular Biology
- Molecular Genetics
- Cellular Communication
Background:
- End-stage, nonobstructive hypertrophic cardiomyopathy (HCM) presents a significant clinical challenge due to the absence of disease-specific treatments.
- Understanding the molecular pathogenesis of nonobstructive HCM is crucial for developing targeted therapies.
Purpose of the Study:
- To investigate the molecular mechanisms underlying nonobstructive hypertrophic cardiomyopathy (HCM) using single nucleus RNA sequencing.
- To identify key cellular and intercellular differences between HCM and healthy donor hearts.
Main Methods:
- Single nucleus RNA sequencing (snRNA-seq) was performed on human HCM explant hearts and control organ donor hearts.
- Differential gene expression analysis and ligand-receptor interaction analysis were conducted to identify molecular changes.
- Cell-type specific expression patterns of genes, including Integrin-β1, were examined.
Main Results:
- 64 differentially expressed genes were identified, associated with specific cell types and molecular functions in HCM hearts.
- Significant reductions in ligand-receptor pairs related to extracellular matrix, growth factor binding, and protease activity were observed in HCM.
- Altered Integrin-β1 expression in various cell types suggests mechanisms for fibrosis and microvascular disease; increased signaling pathway activity was also noted.
Conclusions:
- Single nucleus RNA sequencing reveals distinct intercellular communication patterns in nonobstructive, end-stage HCM.
- Dysregulation of extracellular matrix interactions and specific signaling cascades represent potential therapeutic targets.
- Dendritic cells and altered Integrin-β1 signaling may play critical roles in HCM pathogenesis.
Abstract:
End stage, nonobstructive hypertrophic cardiomyopathy (HCM) is an intractable condition with no disease-specific therapies. To gain insights into the pathogenesis of nonobstructive HCM, we performed single nucleus RNA-sequencing (snRNA-seq) on human HCM hearts explanted at the time of cardiac transplantation and organ donor hearts serving as controls. Differential gene expression analysis revealed 64 differentially expressed genes linked to specific cell types and molecular functions. Analysis of ligand-receptor pair gene expression to delineate potential intercellular communication revealed significant reductions in expressed ligand-receptor pairs likely affecting the extracellular matrix, growth factor binding, peptidase regulator activity, platelet-derived growth factor binding and protease binding in the HCM tissue. Changes in Integrin-β1 receptor expression were responsible for many observed changes related to extracellular matrix interactions, by increasing in dendritic, smooth muscle and pericyte cells while decreasing in endothelial and fibroblast cells, suggesting potential mechanisms for fibrosis and microvascular disease in HCM and a potential role for dendritic cells. In contrast, there was an increase in ligand-receptor pair expression associated with adenylate cyclase binding, calcium channel molecular functions, channel inhibitor activity, ion channel inhibitor activity, phosphatase activator activity, protein kinase activator activity and titin binding, suggesting important shifts in various signaling cascades in nonobstructive, end stage HCM.
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