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RIPK3 modulates sarcoma through immune checkpoint HAVCR2
Chen Qian1, Deluo Wu1, Jianwei Du1
1Department of Orthopedics, Affiliated Hospital of Yangzhou University, Yangzhou, Jiangsu 225000, P.R. China.
Abstract:
Sarcomas is a complex group of malignant diseasse with undetermined molecular mechanisms. Receptor interacting serine/threonine kinase 3 (RIPK3) is a necroptosis- and apoptosis-related marker that has been implicated in several immune-associated diseases and aggressive malignant tumours. In the present study, publicly available transcriptome sequencing data were collected from The Cancer Genome Atlas (TCGA) and Therapeutically Applicable Research To Generate Effective Treatments (TARGET) databases and extensive data mining was performed, focusing on RIPK3 and its potential function in the modulation of gene expression and signaling pathways, immune checkpoints and cell infiltration. Analysis of TCGA and TARGET data revealed 603 up- and 260 downregulated genes in the higher RIPK3 expression group compared with the lower RIPK3 expression groups, with transmembrane channel like 8 and transmembrane protein 97 as the top up- and downregulated genes, respectively. Further pathway analysis revealed that the overexpressed genes were enriched in 'cytokine-cytokine receptor interaction'. Higher RIPK3 was found to be associated with improved survival, the immune checkpoint gene hepatitis A virus cellular receptor 2 (HAVCR2) and an improved response to immune blockade therapy. The potential modulation of HAVCR2 expression by RIPK3 was confirmed by reverse transcription-quantiative PCR in KHOS and 143B human osteosarcoma cell lines. Immune cell infiltration analysis revealed that RIPK3 was positively associated with macrophage and monocyte infiltration, suggesting that RIPK3 executes its function through these immune cells. These findings led to the hypothesis that increased RIPK3 expression may result in improved survival, possibly by regulating the immune checkpoint HAVCR2. In conclusion, the present study comprehensively elucidated the RIPK3 profile with regard to sarcoma survival, transcriptome expression, immune checkpoint therapy and immune cell infiltration. These findings suggest that RIPK3 is potentially a therapeutic target for sarcoma.
Insights
Receptor interacting serine/threonine kinase 3 (RIPK3) expression in sarcoma correlates with better survival and immune response. Increased RIPK3 may improve outcomes by regulating immune checkpoints like HAVCR2, suggesting RIPK3 as a potential therapeutic target.
Area of Science:
- Oncology
- Molecular Biology
- Immunology
Background:
- Sarcomas are complex cancers with unclear molecular drivers.
- Receptor interacting serine/threonine kinase 3 (RIPK3) is linked to immune diseases and aggressive tumors.
Purpose of the Study:
- To investigate the role of RIPK3 in sarcoma.
- To analyze RIPK3's impact on gene expression, pathways, immune checkpoints, and cell infiltration in sarcoma.
Main Methods:
- Utilized The Cancer Genome Atlas (TCGA) and Therapeutically Applicable Research To Generate Effective Treatments (TARGET) databases for transcriptome sequencing data mining.
- Performed gene expression analysis, pathway enrichment, immune cell infiltration analysis, and reverse transcription-quantitative PCR (RT-qPCR).
Main Results:
- Identified 603 upregulated and 260 downregulated genes in higher RIPK3 expression groups.
- Found RIPK3 expression associated with improved survival, hepatitis A virus cellular receptor 2 (HAVCR2), and better response to immune blockade therapy.
- RIPK3 positively correlated with macrophage and monocyte infiltration and modulated HAVCR2 expression.
Conclusions:
- RIPK3 plays a significant role in sarcoma prognosis and immune modulation.
- Increased RIPK3 expression may enhance survival via regulation of immune checkpoint HAVCR2.
- RIPK3 represents a potential therapeutic target for sarcoma treatment.
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