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LOCTseg: A lightweight fully convolutional network for end-to-end optical coherence tomography segmentation.

Esther Parra-Mora1, Luís A da Silva Cruz1

  • 1Department of Electrical and Computer Engineering, University of Coimbra, Coimbra, 3030-290, Portugal; Instituto de Telecomunicações, Coimbra, 3030-290, Portugal.

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|October 17, 2022
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Summary

This study introduces LOCTSeg, a novel deep learning model for automatic segmentation of optical coherence tomography (OCT) images. LOCTSeg achieves high accuracy and efficiency in segmenting retinal structures, improving upon existing methods.

Keywords:
Deep learningEpiretinal membraneFully convolutional networksLightweight architectureMacular puckerMedical image segmentationOptical coherence tomographyRetinal layers segmentation

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Area of Science:

  • Ophthalmology
  • Medical Imaging
  • Computer Vision
  • Artificial Intelligence

Background:

  • Optical coherence tomography (OCT) is crucial for high-resolution retinal imaging in clinical practice.
  • Manual segmentation of retinal structures in OCT images is time-consuming and requires specialized expertise.
  • Variability in retinal structures presents a significant challenge for automated OCT image analysis.

Purpose of the Study:

  • To develop a novel, end-to-end automatic solution for semantic segmentation of OCT images.
  • To introduce LOCTSeg, a lightweight fully convolutional network (FCN) designed for efficient and accurate OCT b-scan segmentation.
  • To evaluate the performance of LOCTSeg against state-of-the-art methods on public and private OCT datasets.

Main Methods:

  • A novel lightweight fully convolutional network (FCN) architecture, termed LOCTSeg, was developed for end-to-end semantic segmentation.
  • LOCTSeg was trained and evaluated on two public datasets (AROI and HCMS) and one private dataset (ERM).
  • Performance was assessed using the Dice score, comparing LOCTSeg against existing segmentation techniques.

Main Results:

  • LOCTSeg achieved improved Dice scores on the AROI dataset (69% to 73%) and HCMS dataset (91% to 92%).
  • The model demonstrated superior performance on ERM segmentation, outperforming other lightweight FCNs by 4% to 15%.
  • LOCTSeg offers competitive inference speed without compromising segmentation accuracy.

Conclusions:

  • LOCTSeg provides an effective and efficient solution for automatic semantic segmentation of OCT images.
  • The proposed FCN architecture significantly advances the state-of-the-art in OCT image analysis.
  • LOCTSeg holds promise for improving diagnostic marker segmentation in clinical ophthalmology.