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Published on: August 3, 2018
The m6A-methylated mRNA pattern and the activation of the Wnt signaling pathway under the hyper-m6A-modifying
Can-Xiang Lin1, Zhi-Jing Chen1, Qi-Lin Peng2
1Key Laboratory of Regenerative Medicine, Ministry of Education, Department of Plastic Surgery, The First Affiliated Hospital of Jinan University, Guangzhou, China.
Abstract:
Purpose: The present study was carried out to investigate the global m6A-modified RNA pattern and possible mechanisms underlying the pathogenesis of keloid. Method: In total, 14 normal skin and 14 keloid tissue samples were first collected on clinics. Then, three samples from each group were randomly selected to be verified with the Western blotting to determine the level of methyltransferase and demethylase. The total RNA of all samples in each group was isolated and subjected to the analysis of MeRIP sequencing and RNA sequencing. Using software of MeTDiff and htseq-count, the m6A peaks and differentially expressed genes (DEGs) were determined within the fold change >2 and p-value < 0.05. The top 10 pathways of m6A-modified genes in each group and the differentially expressed genes were enriched by the Kyoto Encyclopedia of Genes and Genomes signaling pathways. Finally, the closely associated pathway was determined using the Western blotting and immunofluorescence staining. Results: There was a higher protein level of WTAP and Mettl3 in the keloid than in the normal tissue. In the keloid samples, 21,020 unique m6A peaks with 6,573 unique m6A-associated genetic transcripts appeared. In the normal tissue, 4,028 unique m6A peaks with 779 m6A-associated modified genes appeared. In the RNA sequencing, there were 847 genes significantly changed between these groups, transcriptionally. The genes with m6A-methylated modification and the upregulated differentially expressed genes between two tissues were both mainly related to the Wnt signaling pathway. Moreover, the hyper-m6A-modified Wnt/β-catenin pathway in keloid was verified with Western blotting. From the immunofluorescence staining results, we found that the accumulated fibroblasts were under a hyper-m6A condition in the keloid, and the Wnt/β-Catenin signaling pathway was mainly activated in the fibroblasts. Conclusion: The fibroblasts in the keloid were under a cellular hyper-m6A-methylated condition, and the hyper-m6A-modified highly expressed Wnt/β-catenin pathway in the dermal fibroblasts might promote the pathogenesis of keloid.
Insights
Keloid pathogenesis involves altered RNA methylation patterns. Hyper-methylation of the Wnt/β-catenin pathway in dermal fibroblasts promotes keloid development.
Area of Science:
- Molecular Biology
- Epigenetics
- Dermatology
Background:
- Keloids are abnormal scars resulting from excessive fibroblast activity.
- The role of RNA modifications, specifically N6-methyladenosine (m6A), in keloid pathogenesis is not well understood.
Purpose of the Study:
- To investigate the global m6A-modified RNA patterns in keloid tissues.
- To elucidate the underlying mechanisms, particularly the involvement of the Wnt signaling pathway, in keloid development.
Main Methods:
- Comparative analysis of m6A modification patterns and gene expression between keloid and normal skin tissues using MeRIP sequencing and RNA sequencing.
- Validation of key molecular changes using Western blotting and immunofluorescence staining.
Main Results:
- Keloid tissues exhibit significantly higher m6A modification levels and distinct m6A-associated gene profiles compared to normal skin.
- Upregulated differentially expressed genes and m6A-modified genes are predominantly linked to the Wnt signaling pathway.
- Hyper-methylation and activation of the Wnt/β-catenin pathway were confirmed in keloid fibroblasts.
Conclusions:
- Fibroblasts in keloid tissues are characterized by a cellular hyper-m6A-methylated state.
- The hyper-m6A-modified and highly expressed Wnt/β-catenin pathway in dermal fibroblasts likely drives keloid pathogenesis.
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