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Author Spotlight: Advancing Cellular and Protein Engineering to Control Biological Functions and Develop Novel Therapies
Published on: September 27, 2024
Structure of Klebsiella pneumoniae adenosine monophosphate nucleosidase
Brian C Richardson1, Roger Shek2, Wesley C Van Voorhis2
1The Hormel Institute, University of Minnesota, Austin, Minnesota, United States of America.
Abstract:
Klebsiella pneumoniae is a bacterial pathogen that is increasingly responsible for hospital-acquired pneumonia and sepsis. Progressive development of antibiotic resistance has led to higher mortality rates and creates a need for novel treatments. Because of the essential role that nucleotides play in many bacterial processes, enzymes involved in purine and pyrimidine metabolism and transport are ideal targets for the development of novel antibiotics. Herein we describe the structure of K. pneumoniae adenosine monophosphate nucleosidase (KpAmn), a purine salvage enzyme unique to bacteria, as determined by cryoelectron microscopy. The data detail a well conserved fold with a hexameric overall structure and clear density for the putative active site residues. Comparison to the crystal structures of homologous prokaryotic proteins confirms the presence of many of the conserved structural features of this protein yet reveals differences in distal loops in the absence of crystal contacts. This first cryo-EM structure of an Amn enzyme provides a basis for future structure-guided drug development and extends the accuracy of structural characterization of this family of proteins beyond this clinically relevant organism.
Insights
Klebsiella pneumoniae adenosine monophosphate nucleosidase (KpAmn) structure was determined using cryo-EM. This bacterial enzyme is a potential target for novel antibiotics against drug-resistant infections.
Area of Science:
- Microbiology
- Structural Biology
- Drug Discovery
Background:
- Klebsiella pneumoniae is a significant cause of hospital-acquired infections, including pneumonia and sepsis.
- Increasing antibiotic resistance in K. pneumoniae necessitates the development of novel therapeutic strategies.
- Enzymes in purine metabolism are promising targets for new antibacterial agents.
Purpose of the Study:
- To determine the structure of K. pneumoniae adenosine monophosphate nucleosidase (KpAmn) using cryo-electron microscopy.
- To provide a structural basis for the development of novel antibiotics targeting KpAmn.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was employed to elucidate the structure of KpAmn.
- Comparative structural analysis was performed against homologous prokaryotic proteins.
Main Results:
- The structure revealed a conserved fold and a hexameric assembly for KpAmn.
- Key active site residues were identified, along with differences in distal loops compared to crystal structures.
- This is the first cryo-EM structure reported for any Adenosine Monophosphate Nucleosidase (Amn) enzyme.
Conclusions:
- The determined KpAmn structure provides crucial insights for structure-guided drug development.
- This work advances the structural understanding of Amn enzymes in clinically relevant bacteria.
- Targeting KpAmn offers a potential avenue for combating antibiotic-resistant K. pneumoniae infections.
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