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High-throughput Quantitative Real-time RT-PCR Assay for Determining Expression Profiles of Types I and III Interferon Subtypes
Published on: March 24, 2015
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Stochastic dynamics of Type-I interferon responses.
Benjamin D Maier1, Luis U Aguilera1, Sven Sahle1
1Department of Modeling of Biological Processes, COS Heidelberg / Bioquant, Heidelberg University, Heidelberg, Germany.
Plos Computational Biology
|October 21, 2022
Summary
Cellular responses to interferon (IFN) show variability due to random molecular events in the JAK-STAT pathway. This study reveals that the pathway is robust, efficiently transmitting signals despite this intrinsic variability.
Area of Science:
- Immunology
- Systems Biology
- Molecular Biology
Background:
- Interferon (IFN) triggers hundreds of IFN-stimulated genes (ISGs) for antiviral defense.
- Cell-to-cell variability in ISG induction is known but its origins and impact are unclear.
- This heterogeneity is often attributed to molecular noise in the JAK-STAT signaling pathway.
Purpose of the Study:
- To investigate the sources of variability in the interferon-alpha response.
- To analyze the induction of MxA and IFIT1 as indicators of IFN response.
- To understand the robustness of the JAK-STAT pathway in transmitting signals.
Main Methods:
- Integration of time-resolved flow cytometry data.
- Stochastic modeling of the JAK-STAT signaling pathway.
- Fitting probability distributions to flow cytometry data to capture response complexity.
Main Results:
- Both experimental data and simulations showed graded responses for MxA and IFIT1 induction.
- Stochastic effects were significant during early JAK-STAT pathway steps (ligand-receptor activation, ISGF3 complex formation).
- Intrinsic variability was negligible for the final induction of the studied ISGs.
Conclusions:
- The JAK-STAT signaling pathway exhibits robustness.
- The pathway effectively transmits information even in the presence of stochasticity.
- The study clarifies the sources and impact of variability in interferon-stimulated gene induction.
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