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Updated: Aug 24, 2025

Functional Characterization of RING-Type E3 Ubiquitin Ligases In Vitro and In Planta
Published on: December 5, 2019
The E3 ubiquitin ligase RNF115 regulates phagosome maturation and host response to bacterial infection
Orsolya Bilkei-Gorzo1,2, Tiaan Heunis3, José Luis Marín-Rubio3
1Wallenberg Centre for Molecular and Translational Medicine, Department of Microbiology and Immunology at Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.
Abstract:
Phagocytosis is a key process in innate immunity and homeostasis. After particle uptake, newly formed phagosomes mature by acquisition of endolysosomal enzymes. Macrophage activation by interferon gamma (IFN-γ) increases microbicidal activity, but delays phagosomal maturation by an unknown mechanism. Using quantitative proteomics, we show that phagosomal proteins harbour high levels of typical and atypical ubiquitin chain types. Moreover, phagosomal ubiquitylation of vesicle trafficking proteins is substantially enhanced upon IFN-γ activation of macrophages, suggesting a role in regulating phagosomal functions. We identified the E3 ubiquitin ligase RNF115, which is enriched on phagosomes of IFN-γ activated macrophages, as an important regulator of phagosomal maturation. Loss of RNF115 protein or ligase activity enhanced phagosomal maturation and increased cytokine responses to bacterial infection, suggesting that both innate immune signalling from the phagosome and phagolysosomal trafficking are controlled through ubiquitylation. RNF115 knock-out mice show less tissue damage in response to S. aureus infection, indicating a role of RNF115 in inflammatory responses in vivo. In conclusion, RNF115 and phagosomal ubiquitylation are important regulators of innate immune functions during bacterial infections.
Insights
Interferon gamma (IFN-γ) activates macrophages but delays phagosome maturation. Researchers found that the E3 ubiquitin ligase RNF115 regulates this process, impacting innate immunity and inflammatory responses during bacterial infections.
Area of Science:
- Immunology
- Cell Biology
- Molecular Biology
Background:
- Phagocytosis is crucial for innate immunity and cellular homeostasis.
- Macrophages, activated by interferon gamma (IFN-γ), exhibit enhanced microbicidal activity but delayed phagosomal maturation.
- The precise mechanism behind IFN-γ-induced delay in phagosomal maturation remains unclear.
Purpose of the Study:
- To investigate the role of ubiquitylation in regulating phagosomal maturation during macrophage activation.
- To identify specific ubiquitin ligases involved in this process.
- To elucidate the function of RNF115 in innate immune responses to bacterial infection.
Main Methods:
- Quantitative proteomics was employed to analyze phagosomal protein ubiquitylation.
- Macrophage activation with IFN-γ was performed to study changes in ubiquitylation patterns.
- RNF115 function was assessed through protein depletion and ligase activity assays.
- RNF115 knockout mice were used to evaluate in vivo inflammatory responses.
Main Results:
- Phagosomal proteins exhibit diverse ubiquitin chain types, with enhanced ubiquitylation of vesicle trafficking proteins upon IFN-γ activation.
- The E3 ubiquitin ligase RNF115 was identified as being enriched on phagosomes of IFN-γ activated macrophages.
- Loss of RNF115 accelerated phagosomal maturation and boosted cytokine responses to bacterial infection.
- RNF115 knockout mice demonstrated reduced tissue damage following Staphylococcus aureus infection.
Conclusions:
- Phagosomal ubiquitylation, regulated by RNF115, is a key mechanism controlling phagosomal maturation and innate immune signaling.
- RNF115 plays a significant role in modulating inflammatory responses and tissue damage during bacterial infections in vivo.
- Targeting RNF115-mediated ubiquitylation pathways may offer therapeutic strategies for bacterial infections.
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