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Weakly supervised learning and interpretability for endometrial whole slide image diagnosis.
Mahnaz Mohammadi1, Jessica Cooper1, Ognjen Arandelović1
1School of Computer Science, University of St Andrews, St Andrews KY16 9SX, UK.
Experimental Biology and Medicine (Maywood, N.J.)
|October 25, 2022
Summary
Weakly supervised learning was applied to endometrial whole slide images for the first time, achieving high accuracy. Interpretability methods helped understand the model
Area of Science:
- Digital Pathology
- Machine Learning
- Histopathology Imaging
Background:
- Fully supervised learning for histopathology diagnostics requires extensive expert annotation.
- Weakly supervised learning (WSL) offers a solution by using slide-level labels, reducing annotation burden.
- WSL has not been previously applied to endometrial whole slide images in iSyntax format.
Purpose of the Study:
- To apply a WSL algorithm to endometrial whole slide images for diagnostic tasks.
- To evaluate the performance and interpretability of the WSL model.
- To compare machine-learned insights with expert pathologist consensus.
Main Methods:
- Application of a weakly supervised learning algorithm to a real-world endometrial histopathology dataset.
- Utilized interpretability techniques: attention heatmapping, feature visualization, and end-to-end saliency mapping.
- Validated model performance using accuracy metrics on training, validation, and test sets.
Main Results:
- Achieved over 85% validation accuracy and over 87% test accuracy.
- Identified distinct learned morphologies through interpretability methods.
- Demonstrated a practical and robust application of WSL in digital pathology.
Conclusions:
- WSL is a viable and effective approach for endometrial whole slide image analysis.
- Interpretability methods are crucial for understanding and validating AI models in high-stakes medical applications.
- This study bridges the gap between machine learning capabilities and clinical expertise in histopathology.
Keywords:
Digital pathologyXAIadenocarcinomacancer detectionendometrial cancerhyperplasiaiCAIRDinterpretable AIweak supervision
