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Updated: Aug 24, 2025

Polysome Fractionation and Analysis of Mammalian Translatomes on a Genome-wide Scale
Published on: May 17, 2014
mTOR- and LARP1-dependent regulation of TOP mRNA poly(A) tail and ribosome loading
Koichi Ogami1, Yuka Oishi1, Kentaro Sakamoto1
1Department of Biological Chemistry, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya 467-8603, Japan.
Abstract:
Translation of 5' terminal oligopyrimidine (TOP) mRNAs encoding the protein synthesis machinery is strictly regulated by an amino-acid-sensing mTOR pathway. However, its regulatory mechanism remains elusive. Here, we demonstrate that TOP mRNA translation positively correlates with its poly(A) tail length under mTOR active/amino-acid-rich conditions, suggesting that TOP mRNAs are post-transcriptionally controlled by poly(A) tail-length regulation. Consistent with this, the tail length of TOP mRNAs dynamically fluctuates in response to amino acid availability. The poly(A) tail shortens under mTOR active/amino-acid-rich conditions, whereas the long-tailed TOP mRNAs accumulate under mTOR inactive/amino-acid-starved (AAS) conditions. An RNA-binding protein, LARP1, is indispensable for the process. LARP1 interacts with non-canonical poly(A) polymerases and induces post-transcriptional polyadenylation of the target. Our findings illustrate that LARP1 contributes to the selective accumulation of TOP mRNAs with long poly(A) tails under AAS, resulting in accelerated ribosomal loading onto TOP mRNAs for the resumption of translation after AAS.
Insights
Translation of 5' terminal oligopyrimidine (TOP) mRNAs is regulated by poly(A) tail length. LARP1 protein controls TOP mRNA polyadenylation, selectively accumulating long-tailed mRNAs during amino acid starvation to resume protein synthesis.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Translation of 5' terminal oligopyrimidine (TOP) mRNAs, which encode protein synthesis machinery, is regulated by the amino-acid-sensing mTOR pathway.
- The precise regulatory mechanism for TOP mRNA translation remains largely unknown.
Purpose of the Study:
- To elucidate the regulatory mechanism of TOP mRNA translation in response to amino acid availability.
- To investigate the role of poly(A) tail length and RNA-binding proteins in this process.
Main Methods:
- Analysis of TOP mRNA translation and poly(A) tail length under varying amino acid conditions.
- Investigation of the RNA-binding protein LARP1's function and interactions.
- Assessment of LARP1's role in polyadenylation and TOP mRNA accumulation.
Main Results:
- TOP mRNA translation positively correlates with poly(A) tail length under mTOR-active conditions.
- Poly(A) tail length of TOP mRNAs dynamically changes with amino acid availability, shortening when mTOR is active and lengthening during starvation.
- The RNA-binding protein LARP1 interacts with poly(A) polymerases to regulate poly(A) tail length and is crucial for selective TOP mRNA accumulation during amino acid starvation.
Conclusions:
- TOP mRNA translation is post-transcriptionally controlled by poly(A) tail-length regulation.
- LARP1 mediates the selective accumulation of long-tailed TOP mRNAs under amino acid starvation.
- This LARP1-dependent mechanism ensures rapid resumption of protein synthesis upon nutrient refeeding.
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