Functional antibodies exhibit light chain coherence
David B Jaffe1, Payam Shahi2, Bruce A Adams2
110x Genomics, Pleasanton, CA, USA. 99.david.b.jaffe@gmail.com.
Nature
|October 26, 2022
Summary
Functional antibodies exhibit "light chain coherence," where heavy chains predominantly determine light chain usage, unlike naive antibodies that recur by chance. This reveals deterministic processes in adaptive immunity.
Area of Science:
- Immunology
- Genetics
- Molecular Biology
Background:
- The adaptive immune system generates antibody diversity through V(D)J recombination.
- Antibodies consist of heavy and light chains, each with complementarity-determining regions (CDRs) crucial for antigen binding.
- Public clonotypes, B cells sharing identical heavy chains and CDRH3 sequences, are found across individuals.
Purpose of the Study:
- To investigate the association between heavy and light chain gene usage in public clonotypes.
- To determine if antibody functional status (naive vs. memory) influences light chain selection.
- To explore the implications of observed patterns for V(D)J recombination and immune selection.
Main Methods:
- Analysis of heavy and light chain gene usage in public clonotypes from different donors.
- Comparison of light chain gene usage probability between naive and memory B cell antibodies.
- Examination of heavy chain recurrence within individual donors.
Main Results:
- Naive antibodies show a low probability (~10%) of sharing the same light chain V gene within public clonotypes.
- Memory (functional) antibodies exhibit a high probability (~80%) of sharing the same light chain V gene, termed 'light chain coherence'.
- This coherence is also observed with recurrent similar heavy chains within a single donor.
Conclusions:
- The recurrence of naive antibodies appears stochastic, while functional antibodies show significant determinism.
- Light chain coherence in functional antibodies suggests a strong influence of the heavy chain on light chain selection.
- These findings highlight constraints and deterministic factors in V(D)J recombination and adaptive immune selection processes.
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