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Published on: July 29, 2022
Discovering Common Pathogenic Mechanisms of COVID-19 and Parkinson Disease: An Integrated Bioinformatics Analysis
Aria Jahanimoghadam1,2, Hadis Abdolahzadeh3, Niloofar Khoshdel Rad3
1Bioinformatics and Computational Omics Lab (BioCOOL), Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran.
Insights
This study reveals common biological signatures between COVID-19 and Parkinson's disease (PD), identifying key genes and pathways potentially linking these conditions and offering insights into PD development.
Area of Science:
- Genomics and Molecular Biology
- Neuroscience
- Immunology
Background:
- Coronavirus disease 2019 (COVID-19) is a global pandemic with potential neurological implications.
- The association between COVID-19 and Parkinson's disease (PD) remains unclear, with several hypotheses proposed.
- Understanding shared biological mechanisms is crucial for elucidating this link.
Purpose of the Study:
- To identify common molecular signatures between COVID-19 and Parkinson's disease (PD).
- To explore potential biological pathways and regulatory elements connecting these two conditions.
- To provide novel insights into the pathogenesis of PD influenced by viral infections.
Main Methods:
- Analysis of transcriptome data from peripheral blood mononuclear cells (PBMCs) of COVID-19 and PD patients.
- Identification of common differentially expressed genes (DEGs) and construction of protein-protein interaction networks (PPINs).
- Functional enrichment analysis, hub gene detection, and investigation of regulatory transcription factors and miRNAs.
Main Results:
- Identified 81 common DEGs between COVID-19 and PD patients.
- Functional enrichment revealed involvement in complement system, IFNG signaling, oxidative damage, and microglial pathways.
- Discovered 10 hub genes (e.g., MX1, IFI27, C1QC) linked to inflammation, microglia activation, and cytokine storm, regulated by transcription factors like SOX2 and RUNX1.
Conclusions:
- Common biological pathways and molecular mechanisms may link COVID-19 and Parkinson's disease.
- Hub genes and their regulatory networks offer potential therapeutic targets for PD.
- This research provides a molecular basis for understanding the neurological sequelae of COVID-19 in relation to PD.
Abstract:
Coronavirus disease 2019 (COVID-19) has emerged since December 2019 and was later characterized as a pandemic by WHO, imposing a major public health threat globally. Our study aimed to identify common signatures from different biological levels to enlighten the current unclear association between COVID-19 and Parkinson's disease (PD) as a number of possible links, and hypotheses were reported in the literature. We have analyzed transcriptome data from peripheral blood mononuclear cells (PBMCs) of both COVID-19 and PD patients, resulting in a total of 81 common differentially expressed genes (DEGs). The functional enrichment analysis of common DEGs are mostly involved in the complement system, type II interferon gamma (IFNG) signaling pathway, oxidative damage, microglia pathogen phagocytosis pathway, and GABAergic synapse. The protein-protein interaction network (PPIN) construction was carried out followed by hub detection, revealing 10 hub genes (MX1, IFI27, C1QC, C1QA, IFI6, NFIX, C1S, XAF1, IFI35, and ELANE). Some of the hub genes were associated with molecular mechanisms such as Lewy bodies-induced inflammation, microglia activation, and cytokine storm. We investigated regulatory elements of hub genes at transcription factor and miRNA levels. The major transcription factors regulating hub genes are SOX2, XAF1, RUNX1, MITF, and SPI1. We propose that these events may have important roles in the onset or progression of PD. To sum up, our analysis describes possible mechanisms linking COVID-19 and PD, elucidating some unknown clues in between.
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