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Updated: Aug 23, 2025

T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
Published on: January 12, 2021
Distorted TCR repertoires define multisystem inflammatory syndrome in children.
Amna Malik1, Eszter N Tóth2, Michelle S Teng2
1Department of Immunology and Inflammation, Centre for Haematology, Imperial College London, London, United Kingdom.
Multisystem inflammatory syndrome in children (MIS-C) involves unique T cell receptor (TCR) changes. Children with MIS-C show expanded TRBV11-2 T cells lacking SARS-CoV-2 specificity, distorting their TCR repertoires.
Area of Science:
- Immunology
- Virology
- Pediatrics
Background:
- Most children infected with SARS-CoV-2 have mild symptoms, but some develop severe multisystem inflammatory syndrome (MIS-C).
- The underlying immunological mechanisms driving MIS-C severity remain unclear.
- Understanding T cell receptor (TCR) repertoire alterations may elucidate MIS-C pathogenesis.
Purpose of the Study:
- To investigate TCR repertoire differences in children with MIS-C compared to those with mild COVID-19.
- To identify specific T cell populations or TCR features associated with MIS-C.
Main Methods:
- TCR sequencing was performed on samples from children with MIS-C (n=12) and mild COVID-19 (n=8).
- TCR repertoires were compared to pre-pandemic controls (n=8) and a large SARS-CoV-2-specific TCR dataset (Adaptive Biotechnologies MIRA).
Main Results:
- Children with MIS-C exhibited an expansion of TRBV11-2 T cell receptor chains with high junctional and CDR3 diversity.
- The CDR3 sequences of expanded TRBV11-2 clones in MIS-C patients deviated from known SARS-CoV-2 specific T cell clones.
- This deviation indicates a distortion of the overall TCR repertoire in MIS-C.
Conclusions:
- The findings suggest a CDR3-independent expansion of TRBV11-2+ T cells is a hallmark of MIS-C in children.
- These expanded T cells appear to lack specific recognition of SARS-CoV-2, pointing to a non-specific immune response.
- This research provides novel insights into the immunobiology of MIS-C.
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