Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Modern Molecular Taxonomy01:29

Modern Molecular Taxonomy

88
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
88
Applications of Molecular Taxonomy01:20

Applications of Molecular Taxonomy

62
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...
62

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Integrated physicochemical and microbial analyses reveal redox-driven microbial community structure in a polycyclic aromatic hydrocarbon-polluted subsurface.

Environmental pollution (Barking, Essex : 1987)·2026
Same author

Species-Specific Effects of Humic Substances and Mycorrhiza on Antioxidant Defense and Metal Stress Tolerance in <i>Cannabis sativa</i>, <i>Sorghum sudanense × bicolor</i>, and <i>Miscanthus × giganteus</i> Under Field Conditions.

International journal of molecular sciences·2026
Same author

From forest to farm: the impact of a broad spectrum of lifestyles on the porcine gut microbiota.

Current research in microbial sciences·2026
Same author

Targeting Impaired Type I Interferon-IL-27 Signaling Rescues T Regulatory Cell Suppressive Function in Relapsing-Remitting Multiple Sclerosis.

bioRxiv : the preprint server for biology·2026
Same author

Standardized digital PCR assay validation using PCR-ValiPal, demonstrated in cross-platform quantification of bovine papilloma virus.

Analytica chimica acta·2026
Same author

Seed endophytic bacteria are involved in metal adaptation of Orobanche lutea: community dynamics and plant growth promotion traits.

BMC plant biology·2026
Same journal

Hydrogen sulfide modulates gene networks in hypoxia/reoxygenation-stressed trophoblasts: insights from transcriptome profiling.

Frontiers in bioinformatics·2026
Same journal

Molecular Dynamics-Based validation of a quinazoline-based KRAS inhibitor (C9) identified through QSAR-guided discovery.

Frontiers in bioinformatics·2026
Same journal

Real-world chronic recordings from implantable adaptive deep brain stimulation systems for Parkinson's disease motor state classification.

Frontiers in bioinformatics·2026
Same journal

A foundational quantum framework for multi-pattern string matching in k-mer detection.

Frontiers in bioinformatics·2026
Same journal

Explainable machine learning-based identification of transcriptomic biomarkers in CD1c+ dendritic cells for non-infectious uveitis: an integrative analysis of bulk RNA-seq data.

Frontiers in bioinformatics·2026
Same journal

Polygenic modeling of genetic effects on both phenotypic mean and variance: distributional regression for BMI, blood and urine biomarkers in the UK Biobank.

Frontiers in bioinformatics·2026
See all related articles

Related Experiment Video

Updated: Aug 23, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
11:22

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing

Published on: October 15, 2019

29.1K

Exploring the Microbiome Analysis and Visualization Landscape.

Jannes Peeters1, Olivier Thas1, Ziv Shkedy1

  • 1CENSTAT, Data Science Institute (DSI), Hasselt University, Diepenbeek, Belgium.

Frontiers in Bioinformatics
|October 28, 2022
PubMed
Summary
This summary is machine-generated.

This study maps microbiome visualization tools, linking methods and visuals to research goals. It aids researchers in selecting appropriate tools for microbiome data analysis and discovery.

Keywords:
bioinformatcsbiostatisticsdata analysisdata visualizationmicrobiomevisual analytics

More Related Videos

Visualization of Gut Microbiota-host Interactions via Fluorescence In Situ Hybridization, Lectin Staining, and Imaging
09:31

Visualization of Gut Microbiota-host Interactions via Fluorescence In Situ Hybridization, Lectin Staining, and Imaging

Published on: July 9, 2021

8.5K
Microbiota of Attine Ants' Gardens: Visualizing a Microbial Landscape by Scanning Electron Microscopy
07:00

Microbiota of Attine Ants' Gardens: Visualizing a Microbial Landscape by Scanning Electron Microscopy

Published on: October 4, 2024

681

Related Experiment Videos

Last Updated: Aug 23, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
11:22

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing

Published on: October 15, 2019

29.1K
Visualization of Gut Microbiota-host Interactions via Fluorescence In Situ Hybridization, Lectin Staining, and Imaging
09:31

Visualization of Gut Microbiota-host Interactions via Fluorescence In Situ Hybridization, Lectin Staining, and Imaging

Published on: July 9, 2021

8.5K
Microbiota of Attine Ants' Gardens: Visualizing a Microbial Landscape by Scanning Electron Microscopy
07:00

Microbiota of Attine Ants' Gardens: Visualizing a Microbial Landscape by Scanning Electron Microscopy

Published on: October 4, 2024

681

Area of Science:

  • Microbiology
  • Bioinformatics
  • Data Visualization

Background:

  • Microbiome research has rapidly expanded, generating numerous analysis tools.
  • Effective visualization is crucial for interpreting complex microbiome data.

Purpose of the Study:

  • To map existing microbiome visualization tools.
  • To associate methods, visuals, and data features with current microbiome research objectives.
  • To facilitate interdisciplinary communication and collaboration.

Main Methods:

  • A comprehensive literature review of microbiome visualization tools.
  • Workshops involving domain experts to characterize tools and methods.
  • Domain characterization methods for structured analysis.

Main Results:

  • Identification of key research questions in microbiome studies.
  • Categorization of visualization tools based on methods, visual representations, and data features.
  • Mapping of tools to specific research objectives.

Conclusions:

  • The study provides a framework for understanding and selecting microbiome visualization tools.
  • It highlights how different visual analysis approaches address specific microbiome research questions.
  • This resource can enhance the efficiency and effectiveness of microbiome data interpretation.