Related Experiment Video
Updated: Aug 23, 2025

A Mass Spectrometry-Based Approach to Identify Phosphoprotein Phosphatases and their Interactors
Published on: April 29, 2022
The role of serine/threonine phosphatases in human development: Evidence from congenital disorders
Pieter Vaneynde1,2, Iris Verbinnen1,2, Veerle Janssens1,2
1Laboratory of Protein Phosphorylation and Proteomics, Department of Cellular and Molecular Medicine, University of Leuven (KU Leuven), Leuven, Belgium.
Insights
Mutations in serine/threonine protein phosphatases (PSPs) cause congenital diseases, primarily affecting brain development. Most variants are loss-of-function, highlighting PSPs' crucial role in neurological health.
Area of Science:
- Molecular Biology
- Genetics
- Developmental Biology
Background:
- Reversible protein phosphorylation is vital for cellular functions, human health, and disease.
- Mutations in serine/threonine protein phosphatases (PSPs) are increasingly linked to human developmental disorders.
- Unlike protein kinases, PSP gene mutations were historically less associated with congenital diseases.
Purpose of the Study:
- To summarize current knowledge on congenital diseases caused by mutations in human PSP genes.
- To identify affected PSP genes and characterize the nature of pathogenic variants (loss-of-function vs. gain-of-function).
- To investigate the predominant brain-specific abnormalities observed in these disorders.
Main Methods:
- Literature review and data summarization of known congenital diseases linked to PSP gene mutations.
- Analysis of inherited and de novo mutations in genes encoding monomeric, catalytic, or regulatory subunits of PSPs.
- Review of studies on disease mechanisms and downstream targets in relevant in vitro and in vivo models.
Main Results:
- Nineteen PSP genes are identified as associated with congenital disorders.
- The majority of pathogenic variants are loss-of-function mutations.
- Most PSP-related congenital disorders exhibit brain-specific abnormalities, despite widespread tissue expression of PSPs.
Conclusions:
- PSPs play a critical role in human brain development and function.
- Understanding the precise pathogenic mechanisms requires further research into downstream targets and effectors.
- Identification of disease mechanisms could pave the way for novel therapeutic strategies.
Abstract:
Reversible protein phosphorylation is a fundamental regulation mechanism in eukaryotic cell and organismal physiology, and in human health and disease. Until recently, and unlike protein kinases, mutations in serine/threonine protein phosphatases (PSP) had not been commonly associated with disorders of human development. Here, we have summarized the current knowledge on congenital diseases caused by mutations, inherited or de novo, in one of 38 human PSP genes, encoding a monomeric phosphatase or a catalytic subunit of a multimeric phosphatase. In addition, we highlight similar pathogenic mutations in genes encoding a specific regulatory subunit of a multimeric PSP. Overall, we describe 19 affected genes, and find that most pathogenic variants are loss-of-function, with just a few examples of gain-of-function alterations. Moreover, despite their widespread tissue expression, the large majority of congenital PSP disorders are characterised by brain-specific abnormalities, suggesting a generalized, major role for PSPs in brain development and function. However, even if the pathogenic mechanisms are relatively well understood for a small number of PSP disorders, this knowledge is still incomplete for most of them, and the further identification of downstream targets and effectors of the affected PSPs is eagerly awaited through studies in appropriate in vitro and in vivo disease models. Such lacking studies could elucidate the exact mechanisms through which these diseases act, and possibly open up new therapeutic avenues.
Related Concept Videos
Phosphorylation
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
Protein Kinases and Phosphatases
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
Inborn Errors of Metabolism
ATP Synthase: Structure
Transducer Mechanism: Enzyme-Linked Receptors
Major types that are helpful drug targets include:
Genomic Imprinting and Inheritance
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...

