Interpretable machine learning predicts cardiac resynchronization therapy responses from personalized biochemical and
Anamul Haque1, Doug Stubbs1, Nina C Hubig1
1Biomedical Data Science & Informatics Program, Clemson University, Clemson, SC, USA.
BMC Medical Informatics and Decision Making
|November 1, 2022
Summary
Predicting patient response to Cardiac Resynchronization Therapy (CRT) is crucial. Machine learning models integrating diverse patient data accurately identify CRT responders and non-responders, improving treatment outcomes.
Area of Science:
- Cardiology
- Biomedical Engineering
- Artificial Intelligence in Medicine
Background:
- Cardiac Resynchronization Therapy (CRT) is a key treatment for left ventricle (LV) failure.
- Many patients do not respond to CRT, necessitating methods to identify non-responders pre-treatment.
- Predicting CRT response requires integrating demographic, biomarker, and LV function data.
Purpose of the Study:
- To develop a machine learning algorithm for predicting individual patient response to CRT.
- To integrate diverse patient data types for enhanced predictive accuracy.
- To identify patient subgroups with varying likelihoods of CRT response.
Main Methods:
- An ensemble classification algorithm was developed using data from the SMART-AV CRT clinical trial (n=794).
- A five-fold cross-validation approach was used for model training (n=635) and validation (n=159).
- SHapley Additive exPlanations (SHAP) and Local Interpretable Model-agnostic Explanations (LIME) were employed for model interpretability.
Main Results:
- The algorithm achieved 71% accuracy in predicting CRT response using 56 variables (demographics, biomarkers, LV function).
- Stratification identified subgroups with high or low response likelihood, achieving 96% accuracy.
- Feature importance analysis provided insights into key predictive variables.
Conclusions:
- Integrating patient characteristics, comorbidities, therapy history, biomarkers, and LV function data can improve CRT response prediction.
- Machine learning offers a powerful tool for personalizing CRT treatment strategies.
- Accurate prediction of CRT response can optimize patient selection and improve therapeutic outcomes.


