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Updated: Aug 23, 2025

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
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Machine Learning Diffusion Monte Carlo Energies.

Kevin Ryczko1, Jaron T Krogel2, Isaac Tamblyn3,4

  • 1Good Chemistry Company, Vancouver, British ColumbiaV6E 4B1, Canada.

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|November 1, 2022
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Summary
This summary is machine-generated.

Kernel ridge regression (KRR) accurately predicts diffusion Monte Carlo (DMC) energies using small datasets, outperforming deep neural networks and Kohn-Sham density functional theory for materials science applications.

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Area of Science:

  • Computational materials science
  • Machine learning in chemistry
  • Quantum mechanical modeling

Background:

  • Predicting energies from diffusion Monte Carlo (DMC) calculations is computationally expensive.
  • Accurate energy predictions are crucial for understanding material properties and chemical reactions.
  • Existing methods often require large datasets, limiting their applicability.

Purpose of the Study:

  • To develop and compare machine learning methodologies for predicting DMC energies with limited data.
  • To assess the performance of kernel ridge regression (KRR) and voxel deep neural networks (VDNNs).
  • To evaluate the generalizability of KRR models across different material systems and properties.

Main Methods:

  • Voxel deep neural networks (VDNNs) were used to predict DMC energy densities from DFT electron densities.
  • Kernel ridge regression (KRR) was employed to predict atomic contributions to DMC energies using atomic environment vectors.
  • Methodologies were tested on graphene, Stone-Wales defects, and liquid water systems.

Main Results:

  • KRR demonstrated superior performance compared to VDNNs, gradient boosted decision trees, random forest, Gaussian process regression, and multilayer perceptrons.
  • KRR models achieved higher accuracy than Kohn-Sham DFT, with mean absolute errors below chemical accuracy.
  • KRR models showed good generalizability for predicting energy barriers and total energies in diverse systems.

Conclusions:

  • KRR is a highly effective method for predicting DMC energies with small datasets.
  • The developed KRR models offer a computationally efficient and accurate alternative to traditional DFT and DMC calculations.
  • This approach has significant potential for accelerating materials discovery and design.