Characterizing the vaginal microbiota of high and low producing Poll Merino and White Suffolk ewes

There is a substantial, and growing, body of research focused on manipulating gastrointestinal microbes to affect health and production. However, the maternal vaginal microbiota and its effects on neonatal inoculation and lifetime production have received little attention. We aimed to characterize the vaginal microbes of domesticated sheep to determine whether they differ across sheep breeds with differing meat and wool growth potentials and to determine a link between vaginal microbes and high and low producing animals. A flock of White Suffolk (n = 136) and Poll Merino (n = 210) ewes were sorted by the Australian Sheep Breeding Values (ASBV), for yearling fleece weight in the Merino and by post-weaning weight in the Suffolk ewes. The top and bottom ASBV sheep were selected for sampling and the resulting treatment groups were; High Suffolk (n = 12), Low Suffolk (n = 12), High Merino (n = 12), and Low Merino (n = 12) ewes. A double guarded culture swab was used to sample from the surface of the vaginal epithelium. Diversity profiling analysis of vaginal bacterial communities was conducted using 16S rRNA amplicon sequencing. Breed and ASBV group differences in bacterial communities were tested. Within breed, there were no significant differences in ewe vaginal bacterial communities associated with ewe production parameters; however, there was a significant difference in ewe vaginal bacterial communities between breeds. We have been able to characterize the normal vaginal microbiota of nonpregnant ewes and demonstrate a rich microbial community.