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Updated: Aug 23, 2025

Bacterial Artificial Chromosomes: A Functional Genomics Tool for the Study of Positive-strand RNA Viruses
Published on: December 29, 2015
Topoisomerase 3b is dispensable for replication of a positive-sense RNA virus--murine coronavirus
Tianyi Zhang1, Shuaikun Su1, Valerie Altouma1
1Laboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD, 21224, USA.
Abstract:
A recent study demonstrated that a DNA-RNA dual-activity topoisomerase complex, TOP3B-TDRD3, is required for normal replication of positive-sense RNA viruses, including several human flaviviruses and coronaviruses; and the authors proposed that TOP3B is a target of antiviral drugs. Here we examined this hypothesis by investigating whether inactivation of Top3b can inhibit the replication of a mouse coronavirus, MHV, using cell lines and mice that are inactivated of Top3b or Tdrd3. We found that Top3b-KO or Tdrd3-KO cell lines generated by different CRISPR-CAS9 guide RNAs have variable effects on MHV replication. In addition, we did not find significant changes of MHV replication in brains or lungs in Top3B-KO mice. Moreover, immunostaining showed that Top3b proteins are not co-localized with MHV replication complexes but rather, localized in stress granules in the MHV-infected cells. Our results suggest that Top3b does not have a universal role in promoting replication of positive-sense RNA virus, and cautions should be taken when targeting it to develop anti-viral drugs.
Insights
The TOP3B-TDRD3 complex
Area of Science:
- Virology
- Molecular Biology
- Genetics
Background:
- A DNA-RNA dual-activity topoisomerase complex, TOP3B-TDRD3, was recently implicated in the replication of positive-sense RNA viruses.
- This complex, particularly TOP3B, was proposed as a potential target for antiviral drug development.
Purpose of the Study:
- To investigate the role of TOP3B in the replication of a mouse coronavirus, MHV.
- To evaluate the hypothesis that TOP3B inactivation can inhibit viral replication.
Main Methods:
- Utilized CRISPR-Cas9 gene editing to create Top3b-knockout (KO) and Tdrd3-KO cell lines.
- Infected these cell lines and Top3B-KO mice with MHV.
- Performed immunostaining to assess the localization of Top3b proteins in infected cells.
Main Results:
- Top3b-KO and Tdrd3-KO cell lines showed variable effects on MHV replication.
- No significant changes in MHV replication were observed in the brains or lungs of Top3B-KO mice.
- Top3b proteins were found in stress granules, not co-localized with MHV replication complexes.
Conclusions:
- Top3b does not appear to have a universal role in promoting positive-sense RNA virus replication.
- Targeting TOP3B for antiviral drug development may require further consideration due to its complex role.
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