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Selecting Better Biocatalysts by Complementing Recoded Bacteria.

Rudy Rubini1, Suzanne C Jansen1, Houdijn Beekhuis1

  • 1Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

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Summary
This summary is machine-generated.

This study introduces a novel in vivo selection method for enzyme evolution using recoded organisms. This approach enhances biocatalyst development by linking non-canonical amino acid production to cellular survival, enabling significant efficiency improvements.

Keywords:
CarbamoylasesDirected EvolutionGenetic-Code ExpansionIn Vivo SelectionSynthetic Biology

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Area of Science:

  • Biotechnology
  • Synthetic Biology
  • Enzyme Engineering

Background:

  • In vivo selections are crucial for directed enzyme evolution but challenging for non-metabolic enzymes.
  • Linking enzymatic activity to cellular survival is a key limitation.

Purpose of the Study:

  • To develop a versatile in vivo selection strategy for evolving biocatalysts.
  • To engineer enzymes providing non-canonical amino acids (ncAAs) from synthetic precursors.

Main Methods:

  • Utilized recoded organisms dependent on ncAAs.
  • Employed serial passaging under selective conditions.
  • Engineered carbamoylases for ncAA precursor conversion.

Main Results:

  • Achieved catalytic efficiencies over five orders of magnitude higher than wild-type enzymes.
  • Demonstrated correlation between bacterial growth rates and enzymatic activity.
  • Successfully evolved improved enzyme variants with minimal intervention.

Conclusions:

  • The developed platform enables efficient in vivo directed evolution of biocatalysts.
  • The strategy is versatile, requiring minimal human intervention and no specialized equipment.
  • This method facilitates the evolution of enzymes for producing essential building blocks like ncAAs.