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Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

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Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
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Nucleosome Remodeling02:54

Nucleosome Remodeling

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Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
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Epigenetic Regulation01:37

Epigenetic Regulation

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Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
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Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

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The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

23.5K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
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Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

5.6K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
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Related Experiment Video

Updated: Aug 22, 2025

Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique
09:14

Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique

Published on: January 14, 2016

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Chromatin Dynamics During Entry to Quiescence and Compromised Functionality in Cancer Cells.

Olivia Grace Dobbs1, Dawn Coverley2

  • 1Department of Biology, University of York, York, UK. grace.dobbs@york.ac.uk.

Results and Problems in Cell Differentiation
|November 8, 2022
PubMed
Summary

Cellular quiescence allows cells to reversibly exit the cell cycle. Understanding nuclear changes during this state is crucial for preventing diseases like cancer.

Keywords:
ChromatinCondensin complexH4K20meNuclear condensationQuiescence

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An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
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CRISPR-Mediated Reorganization of Chromatin Loop Structure
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CRISPR-Mediated Reorganization of Chromatin Loop Structure

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Related Experiment Videos

Last Updated: Aug 22, 2025

Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique
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Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique

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An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
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CRISPR-Mediated Reorganization of Chromatin Loop Structure
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CRISPR-Mediated Reorganization of Chromatin Loop Structure

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Area of Science:

  • Cell Biology
  • Molecular Biology
  • Genomics

Background:

  • Cellular quiescence is a reversible state of cell cycle exit crucial for development and stress response.
  • Dysregulation of quiescence contributes to diseases, including cancer.
  • Nuclear structural changes, including chromatin compaction, characterize entry into quiescence.

Purpose of the Study:

  • To review current literature on chromatin dynamics during quiescence entry.
  • To explore the link between quiescence, nuclear organization, and disease.
  • To highlight the need for further research into the mechanisms of quiescent nucleus formation.

Main Methods:

  • Literature review of studies on cell cycle regulation, nuclear architecture, and chromatin dynamics.
  • Analysis of gene expression programs associated with quiescence.
  • Examination of the role of the condensin complex in nuclear stabilization.

Main Results:

  • Quiescence involves significant nuclear alterations, including altered gene expression and increased chromatin compaction.
  • A core quiescence gene expression program and nuclear reorganisation are vital for a stable quiescent state.
  • The condensin complex plays a role in establishing a quiescent nucleus.

Conclusions:

  • The mechanisms governing quiescent nucleus formation require further elucidation.
  • Understanding the link between disrupted quiescence, genome instability, and disease is critical.
  • Further research may advance medical interventions for cancer and other diseases.