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Related Concept Videos

Enzymes02:34

Enzymes

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Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
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ATP Synthase: Structure01:18

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ATP synthase or ATPase is among the most conserved proteins found in bacteria, mammals, and plants. This enzyme can catalyze a forward reaction in response to the electrochemical gradient, producing ATP from ADP and inorganic phosphate. ATP synthase can also work in a reverse direction by hydrolyzing ATP and generating an electrochemical gradient. Different forms of ATP synthases have evolved special features to meet the specific demands of the cell. Based on their specific feature, ATP...
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Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
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Translesion DNA Polymerases02:10

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Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
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ATP Synthase: Mechanism01:48

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In animals, the mitochondrial F1F0 ATP synthase is the key protein that synthesizes ATP molecules through a complex catalytic mechanism. While the nuclear genome encodes the majority of ATP synthase subunits, the mitochondrial genome encodes some of the enzyme's most critical components. The formation of this multi-subunit enzyme is a complex multi-step process regulated at the level of transcription, translation, and assembly. Defects in one or more of these steps can result in decreased...
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Mechanical Protein Functions01:58

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Proteins perform many mechanical functions in a cell. These proteins can be classified into two general categories- proteins that generate mechanical forces and proteins that are subjected to mechanical forces. Proteins providing mechanical support to the structure of the cell, such as keratin, are subjected to mechanical force, whereas proteins involved in cell movement and transport of molecules across cell membranes, such as an ion pump, are examples of generating mechanical force. 
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Related Experiment Video

Updated: Aug 22, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
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Structure and Function of TET Enzymes.

Xiaotong Yin1, Lulu Hu2,3, Yanhui Xu4,5,6

  • 1Fudan University Shanghai Cancer Center, Institute of Biomedical Sciences, Shanghai Medical College of Fudan University, Shanghai, China.

Advances in Experimental Medicine and Biology
|November 9, 2022
PubMed
Summary

Ten-eleven translocation (TET) enzymes oxidize 5-methylcytosine (5mC) to derivatives, playing key roles in DNA demethylation, gene transcription, development, and cancer. This chapter details TET enzyme discovery, function, and regulation.

Keywords:
5caC5fC5hmC5mCDNA demethylationEpigenetic modificationTET

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Efficient Purification and LC-MS/MS-based Assay Development for Ten-Eleven Translocation-2 5-Methylcytosine Dioxygenase
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Efficient Purification and LC-MS/MS-based Assay Development for Ten-Eleven Translocation-2 5-Methylcytosine Dioxygenase
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Efficient Purification and LC-MS/MS-based Assay Development for Ten-Eleven Translocation-2 5-Methylcytosine Dioxygenase

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Area of Science:

  • Epigenetics and Molecular Biology
  • Biochemistry
  • Genetics

Background:

  • DNA methylation, primarily 5-methylcytosine (5mC), is crucial for mammalian gene regulation.
  • Ten-eleven translocation (TET) enzymes catalyze the oxidation of 5mC to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC).
  • These oxidized derivatives and TET enzymes are implicated in critical biological processes like DNA demethylation, gene transcription, embryonic development, and oncogenesis.

Purpose of the Study:

  • To provide a comprehensive overview of TET-mediated 5-methylcytosine oxidation.
  • To discuss the structure, function, and regulatory mechanisms of TET enzymes.
  • To explore the roles of TET enzymes and their oxidized derivatives in various biological and pathological contexts.

Main Methods:

  • Review of existing literature on TET enzymes and DNA methylation.
  • Discussion of biochemical mechanisms of 5mC oxidation and demethylation.
  • Analysis of structural data related to TET enzyme substrate recognition.

Main Results:

  • Detailed explanation of TET-mediated sequential oxidation of 5mC.
  • Elucidation of TET enzyme roles in epigenetic reprogramming during pluripotency, embryogenesis, tumorigenesis, and neural system function.
  • Summary of factors regulating TET activity, including chemical molecules and protein interactions.

Conclusions:

  • TET enzymes and their oxidized 5mC derivatives are central regulators of epigenetic processes.
  • Dysregulation of TET activity is linked to significant pathological conditions, notably cancer.
  • Understanding TET enzyme structure, function, and regulation is vital for advancing fields from developmental biology to oncology.