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Glycomyces amatae sp. nov., isolated from a yellow-ringed grass moth (Amata sperbius)
Chanwit Suriyachadkun1, Wipaporn Ngaemthao1, Tawanmol Pujchakarn1
1National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Thailand Science Park, Phaholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand.
Abstract:
A novel mycelium-forming actinomycete strain, designated A-F 0318T, was isolated from a yellow-ringed grass moth (Amata sperbius) collected from Phitsanulok Province, Thailand. Long chains of non-motile cylindrical spores with a smooth surface developed on aerial mycelia. The polyphasic taxonomic study suggested that strain A-F 0318T belonged to the genus Glycomyces. The 16S rRNA gene sequence analysis indicated that strain A-F 0318T was closely related to Glycomyces harbinensis LL-DO5139T with 97.94 % sequence similarity. The average nucleotide identity (ANI) based on blast, ANI based on the MUMmer algorithm and average amino acid identity values of strain A-F 0318T with G. harbinensis LL-DO5139T were 86.9, 89.1 and 84.24 %, respectively. The digital DNA-DNA hybridization value between A-F 0318T and its closest relative, G. harbinensis LL-DO5139T was 33.8 %. The digital G+C content of the genomic DNA was 71.7 mol%. The cell-wall peptidoglycan contained meso-diaminopimelic acid. The whole-cell sugars contained ribose, xylose, glucose and galactose. The predominant menaquinone was MK-10(H4). The predominant fatty acids were iso-C16 : 0, anteiso-C15 : 0, anteiso-C17 : 0 and iso-C16 : 1 G. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, two unknown phosphoglycolipids and one unknown phospholipid. Based on comparative analysis of genotypic, phenotypic and chemotaxonomic data, the novel actinomycete strain A-F 0318T (=TBRC 13612T=NBRC 115417T) represents the type strain of a novel species, for which the name Glycomyces amatae sp. nov. is proposed.
Insights
A novel actinomycete strain, Glycomyces amatae sp. nov., was isolated from a moth in Thailand. This discovery expands the known diversity within the Glycomyces genus.
Area of Science:
- Microbiology
- Taxonomy
- Actinobacteria
Background:
- Actinomycetes are a diverse group of bacteria known for producing bioactive compounds.
- The genus Glycomyces comprises actinomycetes with unique morphological and chemotaxonomic features.
- Insect-associated microorganisms represent an underexplored source of novel bacterial species.
Purpose of the Study:
- To isolate and characterize a novel actinomycete strain from an insect host.
- To determine the taxonomic placement of the novel strain using polyphasic characterization.
- To propose a new species within the genus Glycomyces.
Main Methods:
- Isolation and cultivation of actinomycete strain A-F 0318T from Amata sperbius.
- Morphological and physiological characterization of the isolate.
- 16S rRNA gene sequencing and phylogenetic analysis.
- Genomic analysis including average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH).
- Chemotaxonomic analyses (cell-wall composition, whole-cell sugars, menaquinone, fatty acids, polar lipids).
Main Results:
- Strain A-F 0318T formed long chains of smooth, cylindrical spores on aerial mycelia.
- Phylogenetic analysis placed strain A-F 0318T within the genus Glycomyces, closely related to Glycomyces harbinensis (97.94% 16S rRNA gene similarity).
- Genomic data (ANI 86.9-89.1%, dDDH 33.8%) supported the differentiation of strain A-F 0318T from G. harbinensis.
- Chemotaxonomic data (meso-diaminopimelic acid, specific whole-cell sugars, MK-10(H4), characteristic fatty acids) were consistent with the genus Glycomyces.
Conclusions:
- Strain A-F 0318T represents a distinct species within the genus Glycomyces.
- The proposed name for this novel species is Glycomyces amatae sp. nov.
- This finding highlights the potential of insect-associated environments for discovering novel microbial diversity.
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