Non-viral precision Tcell receptor replacement for personalized cell therapy

Susan P Foy1, Kyle Jacoby2, Daniela A Bota3

  • 1PACT Pharma, South San Francisco, CA, USA. sfoy@pactpharma.com.

Nature
|November 10, 2022
PubMed

Insights

This study developed a clinical-grade CRISPR-Cas9 gene-editing method to engineer T-cells with neoantigen-specific T-cell receptors (neoTCRs) for cancer therapy. The approach successfully knocked out endogenous TCRs and inserted neoTCRs, demonstrating feasibility and T-cell trafficking to tumors.

Area of Science:

  • Immunology
  • Genetics
  • Oncology

Background:

  • T-cell receptors (TCRs) are crucial for T-cells to identify cancer-specific mutations.
  • Current T-cell therapies often face challenges in specificity and efficacy against solid tumors.

Purpose of the Study:

  • To develop and evaluate a clinical-grade, non-viral CRISPR-Cas9 genome-editing approach for engineering T-cells with neoantigen-specific TCRs (neoTCRs).
  • To assess the safety, feasibility, and in vivo T-cell trafficking of neoTCR-engineered T-cell products in patients with refractory solid cancers.

Main Methods:

  • Simultaneous knockout of endogenous TRAC and TRBC genes using CRISPR-Cas9 non-viral genome editing.
  • Insertion of neoantigen-specific TCRs (neoTCRs) into the TRAC locus, with neoTCRs isolated using personalized neoantigen-HLA capture reagents.
  • Phase I clinical trial administering up to three distinct neoTCR transgenic T-cell products in a dose-escalation manner to patients with refractory solid cancers.

Main Results:

  • Successful simultaneous knockout of endogenous TCR genes and knock-in of neoTCRs using a single-step, non-viral precision genome-editing method.
  • neoTCR transgenic T-cells were detected in tumor biopsies post-infusion at higher frequencies than endogenous TCRs pre-infusion, indicating successful tumor trafficking.
  • Observed manageable side effects, including cytokine release syndrome and encephalitis in one patient each, alongside expected chemotherapy-related side effects.

Conclusions:

  • Demonstrated the feasibility of isolating and cloning multiple TCRs targeting mutational neoantigens.
  • Established the clinical-grade manufacture and safety of infusing multiple gene-edited neoTCR T-cell products.
  • Confirmed the ability of engineered T-cells to traffic to tumor sites in patients, supporting the potential of this approach for cancer immunotherapy.

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