Related Experiment Video
Updated: Aug 22, 2025

Isolation and Characterization of a Head and Neck Squamous Cell Carcinoma Subpopulation Having Stem Cell Characteristics
Published on: May 11, 2016
An ErbB Lineage Co-Regulon Harbors Potentially Co-Druggable Targets for Multimodal Precision Therapy in Head and Neck
Markus Bredel1, Hyunsoo Kim2, James A Bonner1
1Department of Radiation Oncology, O'Neal Comprehensive Cancer Center, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Abstract:
The ErbB lineage of oncogenic receptor tyrosine kinases is frequently overexpressed in head and neck squamous cell carcinomas. A common co-regulon triggered by the ErbB proteins; involving shared signaling circuitries; may harbor co-druggable targets or response biomarkers for potential future multimodal precision therapy in ErbB-driven head and neck squamous cell carcinoma. We here present a cohort-based; genome-wide analysis of 488 head and neck squamous cell carcinomas curated as part of The Cancer Genome Atlas Project to characterize genes that are significantly positively co-regulated with the four ErbB proteins and those that are shared among all ErbBs denoting a common ErbB co-regulon. Significant positive gene correlations involved hundreds of genes that were co-expressed with the four ErbB family members (q < 0.05). A common; overlapping co-regulon consisted of a core set of 268 genes that were uniformly co-regulated with all four ErbB genes and highly enriched for functions in chromatin organization and histone modifications. This high-priority set of genes contained ten putative antineoplastic drug-gene interactions. The nature and directionality of these ten drug-gene associations was an inhibiting interaction for seven (PIK3CB; PIK3C2B; HDAC4; FRK; PRKCE; EPHA4; and DYRK1A) of them in which the drug decreases the biological activity or expression of the gene target. For three (CHD4; ARID1A; and PBRM1) of the associations; the directionality of the interaction was such that the gene predicted sensitivit y to the drug suggesting utility as potential response biomarkers. Drug-gene interactions that predicted the gene product to be reduced by the drug included a variety of potential targeted molecular agent classes. This unbiased genome-wide analysis identified a target-rich environment for multimodal therapeutic approaches in tumors that are putatively ErbB-driven. The results of this study require preclinical validation before ultimately devising lines of combinatorial treatment strategies for ErbB-dependent head and neck squamous cell carcinomas that incorporate these findings.
Insights
Researchers identified a common set of genes co-regulated by ErbB proteins in head and neck squamous cell carcinomas. This co-regulon reveals potential drug targets and biomarkers for precision therapies in ErbB-driven cancers.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- ErbB receptor tyrosine kinases are overexpressed in head and neck squamous cell carcinomas (HNSCC).
- Shared signaling pathways among ErbB proteins suggest potential co-druggable targets or biomarkers for precision therapy.
Purpose of the Study:
- To perform a genome-wide analysis of HNSCC to identify genes co-regulated with ErbB proteins.
- To characterize a common ErbB co-regulon and its associated drug-gene interactions for potential therapeutic strategies.
Main Methods:
- Genome-wide analysis of 488 HNSCC samples from The Cancer Genome Atlas Project.
- Identification of genes significantly positively correlated with the four ErbB family members.
- Analysis of gene enrichment for functions and drug-gene interactions within the common co-regulon.
Main Results:
- Hundreds of genes were found to be co-expressed with ErbB family members (q < 0.05).
- A core co-regulon of 268 genes, uniformly co-regulated by all ErbBs, was identified, enriched for chromatin organization and histone modification functions.
- Ten putative antineoplastic drug-gene interactions were found, with seven showing drug-induced inhibition and three predicting drug sensitivity.
Conclusions:
- An unbiased genome-wide analysis revealed a target-rich environment for multimodal therapies in ErbB-driven HNSCC.
- The identified co-regulon and drug-gene interactions offer potential targets and biomarkers for precision medicine approaches.
- Preclinical validation is necessary to develop combinatorial treatment strategies for ErbB-dependent HNSCC.
Related Concept Videos
The Retinoblastoma Gene
The first-ever tumor suppressor gene called Rb was identified in retinoblastoma - a rare eye tumor in children. In inherited forms of the disease, a child inherits one defective copy of the Rb gene, which predisposes them to retinoblastoma. However,...
Negative Regulator Molecules
Abnormal Proliferation
Role of Ephrin-Eph Signalling in Intestinal Stem Cell Renewal
Receptor Downregulation in MVBs
The EGFR can initiate signaling pathways that lead to cell proliferation, migration, and differentiation. Overexpression of EGFR stimulates cells to proliferate. Excessive EGFR...
Mitogens and the Cell Cycle

