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Large-scale Three-dimensional Imaging of Cellular Organization in the Mouse Neocortex
Published on: September 5, 2018
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Sparse postnatal labeling and quantification of superficial cortical cell synapses in the mouse neocortex
Lorenzo Gesuita1, Ali Özgür Argunsah1, Theofanis Karayannis1
1Laboratory of Neural Circuit Assembly, Brain Research Institute, University of Zurich, 8057 Zurich, Switzerland; Neuroscience Center Zurich (ZNZ), 8057 Zurich, Switzerland.
STAR Protocols
|November 17, 2022
Summary
We developed a new method to count presynaptic boutons on mouse cortical neurons. This technique uses electroporation for sparse labeling and custom software for accurate density measurements.
Area of Science:
- Neuroscience
- Cell Biology
- Molecular Biology
Background:
- Understanding neuronal connectivity is crucial for deciphering brain function.
- Quantifying presynaptic bouton density provides insights into synaptic plasticity and network dynamics.
- Existing methods may lack the precision or specificity required for detailed analysis of cortical interneurons.
Purpose of the Study:
- To establish a robust strategy for measuring presynaptic bouton density in superficial mouse neocortical neurons.
- To enable precise quantification of synaptic structures along axonal processes.
- To provide a versatile protocol adaptable to various neuronal cell types.
Main Methods:
- Neonatal pial-surface electroporation for sparse labeling of individual postmitotic cells.
- Development of custom-made computational code for automated quantification of bouton density.
- Application of the method to somatostatin-positive cortical interneurons.
Main Results:
- Successful sparse labeling of individual neurons in the mouse neocortex.
- Validated custom code for accurate and efficient quantification of presynaptic bouton density.
- Demonstrated the applicability of the strategy to a major population of cortical interneurons.
Conclusions:
- The presented strategy offers a reliable approach for assessing presynaptic bouton density in cortical neurons.
- This method can be adapted to study other neuronal populations, advancing the field of neurobiology.
- The protocol facilitates detailed investigations into neuronal structure-function relationships.

