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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Discovery of Nanomolar-Affinity Pharmacological Chaperones Stabilizing the Oncogenic p53 Mutant Y220C
Joseph R Stephenson Clarke1, Leon R Douglas2, Patrick J Duriez3
1School of Chemistry and Institute for Life Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom.
Abstract:
The tumor suppressor protein p53 is inactivated in the majority of human cancers and remains a prime target for developing new drugs to reactivate its tumor suppressing activity for anticancer therapies. The oncogenic p53 mutant Y220C accounts for approximately 125,000 new cancer cases per annum and is one of the most prevalent p53 mutants overall. It harbors a narrow, mutationally induced pocket at the surface of the DNA-binding domain that destabilizes p53, leading to its rapid denaturation and aggregation. Here, we present the structure-guided development of high-affinity small molecules stabilizing p53-Y220C in vitro, along with the synthetic routes developed in the process, in vitro structure-activity relationship data, and confirmation of their binding mode by protein X-ray crystallography. We disclose two new chemical probes displaying sub-micromolar binding affinity in vitro, marking an important milestone since the discovery of the first small-molecule ligand of Y220C in 2008. New chemical probe JC744 displayed a K d = 320 nM, along with potent in vitro protein stabilization. This study, therefore, represents a significant advance toward high-affinity Y220C ligands for clinical evaluation.
Insights
Researchers developed high-affinity small molecules to stabilize the p53-Y220C oncoprotein, a key target in cancer therapy. These novel compounds show promise for reactivating tumor suppressor functions and advancing clinical evaluation for cancer treatment.
Area of Science:
- Biochemistry
- Molecular Biology
- Drug Discovery
Background:
- The tumor suppressor protein p53 is frequently inactivated in human cancers.
- The p53-Y220C mutant is a prevalent oncogenic form, destabilized by a unique surface pocket.
- Reactivating p53's tumor-suppressing activity is a critical goal for anticancer therapies.
Purpose of the Study:
- To develop high-affinity small molecules that stabilize the p53-Y220C mutant.
- To identify novel chemical probes for potential clinical evaluation in cancer treatment.
Main Methods:
- Structure-guided design of small molecules targeting the p53-Y220C pocket.
- Synthesis of novel compounds and evaluation of their binding affinity and protein stabilization.
- Confirmation of binding mode using protein X-ray crystallography.
Main Results:
- Developed two new chemical probes with sub-micromolar binding affinity for p53-Y220C in vitro.
- Identified JC744 with a K d of 320 nM and potent in vitro protein stabilization.
- Established structure-activity relationships and confirmed binding modes.
Conclusions:
- Significant advancement in the development of high-affinity ligands for the p53-Y220C mutant.
- These findings represent a milestone towards clinical evaluation of p53-Y220C targeted therapies.
- The developed chemical probes offer a promising avenue for reactivating tumor suppressor functions in cancer.
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