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Genomic Profiling of Sarcomas: A Promising Weapon in the Therapeutic Arsenal
Raquel Lopes-Brás1, Dolores Lopez-Presa2, Miguel Esperança-Martins1,3,4
1Department of Medical Oncology, Hospital Santa Maria, Centro Hospitalar Universitário Lisboa Norte, 1649-028 Lisbon, Portugal.
Abstract:
Sarcomas are rare malignant mesenchymal neoplasms, and the knowledge of tumor biology and genomics is scarce. Chemotherapy is the standard of care in advanced disease, with poor outcomes. Identifying actionable genomic alterations may offer effective salvage therapeutic options when previous lines have failed. Here, we report a retrospective cohort study of sarcoma patients followed at our center and submitted to comprehensive genomic profiling between January 2020 and June 2021. Thirty patients were included, most (96.7%) with reportable genomic alterations. The most common alterations were linked to cell cycle regulation (TP53, CDKN2A/B, and RB1 deletions and CDK4, MDM2, and MYC amplifications). Most patients (96.7%) had microsatellite stability and low tumor mutational burden (≤10 muts/megabase (Mb); median 2 Muts/Mb). Two-thirds of patients had actionable mutations for targeted treatments, including five cases with alterations amenable to targeted therapies with clinical benefit within the patient's tumor type, ten cases with targetable alterations with clinical benefit in other tumor types, and five cases with alterations amenable to targeting with drugs under investigation in a clinical trial setting. A significant proportion of cases in this study had actionable genomic alterations with available targeted drugs. Next-generation sequencing is a feasible option for identifying molecular drivers that can provide therapeutic options for individual patients. Molecular Tumor Boards should be implemented in the clinical practice to discuss genomic findings and inform clinically relevant targeted therapies.
Insights
Comprehensive genomic profiling of sarcoma patients revealed frequent actionable mutations. These findings support targeted therapies and the implementation of Molecular Tumor Boards for personalized cancer treatment.
Area of Science:
- Oncology
- Genomics
- Cancer Biology
Background:
- Sarcomas are rare cancers with limited understanding of tumor biology and genomics.
- Current chemotherapy offers poor outcomes for advanced sarcoma patients.
- Identifying actionable genomic alterations is crucial for developing effective salvage therapies.
Purpose of the Study:
- To investigate the landscape of genomic alterations in sarcoma patients.
- To assess the feasibility of comprehensive genomic profiling for identifying therapeutic targets.
- To evaluate the potential of targeted therapies based on molecular profiling.
Main Methods:
- Retrospective cohort study of 30 sarcoma patients undergoing comprehensive genomic profiling.
- Analysis of genomic alterations, including cell cycle regulation-associated mutations.
- Assessment of microsatellite stability and tumor mutational burden.
Main Results:
- Nearly all patients (96.7%) exhibited reportable genomic alterations, predominantly affecting cell cycle regulation.
- Most patients had microsatellite stability and low tumor mutational burden.
- Two-thirds of patients possessed actionable mutations, with several cases showing potential for targeted treatments.
Conclusions:
- Comprehensive genomic profiling is a valuable tool for identifying actionable targets in sarcoma.
- A significant proportion of sarcomas harbor alterations amenable to targeted therapies.
- Integrating Molecular Tumor Boards can enhance clinical decision-making for personalized sarcoma treatment.
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