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Updated: Aug 19, 2025

Chemical Inactivation of the E3 Ubiquitin Ligase Cereblon by Pomalidomide-based Homo-PROTACs
Published on: May 15, 2019
Design, Synthesis, and Biological Evaluation of mTOR-Targeting PROTACs Based on MLN0128 and Pomalidomide
Qi Zhang1, Peizheng Yan1, Pan Zhao1
1College of Pharmacy, Shandong University of Traditional Chinese Medicine.
Abstract:
Mechanistic target of rapamycin (mTOR) is an effective anti-tumor drug target. Several mTOR kinase inhibitors have entered clinical research, but there are still challenges of potential toxicity. As a new type of targeted drug, proteolysis targeting chimeras (PROTACs) have features of low dosage and low toxicity. However, this approach has been rarely reported to involve mTOR degradation. In this study, the mTOR kinase inhibitor MLN0128 was used as the ligand to the protein of interest and conjugated with pomalidomide by diverse intermediate linkage chains. Several potential small molecule PROTACs for the degradation of mTOR were designed and synthesized. PROTAC compounds exhibited mTOR inhibitory activity and suppressed MCF-7 cell proliferation. The representative compound P1 could inhibit the expression of mTOR downstream proteins and the growth of cancer cells by inducing autophagy but not affecting the cell cycle and not inducing apoptosis.
Insights
New proteolysis targeting chimeras (PROTACs) were designed to degrade mechanistic target of rapamycin (mTOR). These PROTACs show potential for low-toxicity cancer therapy by inhibiting mTOR and inducing autophagy in cancer cells.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Mechanistic target of rapamycin (mTOR) is a validated anti-tumor target.
- Current mTOR kinase inhibitors face challenges with toxicity.
- Proteolysis targeting chimeras (PROTACs) offer a promising low-dose, low-toxicity therapeutic approach.
Purpose of the Study:
- To design and synthesize novel PROTACs for targeted degradation of mTOR.
- To evaluate the efficacy of these PROTACs in inhibiting cancer cell proliferation.
- To explore the mechanism of action of mTOR-degrading PROTACs.
Main Methods:
- Utilized the mTOR kinase inhibitor MLN0128 as the protein-of-interest ligand.
- Conjugated MLN0128 with pomalidomide via various linker chains to create PROTACs.
- Assessed PROTACs for mTOR inhibitory activity, cell proliferation suppression, and downstream protein inhibition in MCF-7 cells.
Main Results:
- Successfully designed and synthesized novel small molecule PROTACs targeting mTOR.
- PROTAC compounds demonstrated mTOR inhibitory activity and suppressed MCF-7 cell proliferation.
- The representative compound P1 induced autophagy, inhibited mTOR downstream proteins, and reduced cancer cell growth without affecting cell cycle or inducing apoptosis.
Conclusions:
- Novel PROTACs effectively degrade mTOR, offering a potential new therapeutic strategy in oncology.
- The developed PROTACs exhibit anti-cancer effects through mTOR inhibition and autophagy induction.
- This study highlights the potential of PROTAC technology for developing safer and more effective mTOR-targeted cancer therapies.
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