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Updated: Aug 19, 2025

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
Human T cells recognize HLA-DP-bound peptides in two orientations
Sebastian Klobuch1, Jia Jia Lim2, Peter van Balen1
1Department of Hematology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Human leukocyte antigen (HLA) molecules can present peptides in a reversed orientation, challenging a long-held scientific belief. This discovery broadens our understanding of how the immune system recognizes pathogens and cancer cells.
Area of Science:
- Immunology
- Molecular Biology
- Structural Biology
Background:
- Human leukocyte antigen (HLA) molecules present peptides to T cells for immune recognition.
- A long-standing dogma posits that peptide binding to HLA molecules occurs in a conserved N- to C-terminal orientation.
Purpose of the Study:
- To investigate the possibility of reversed C- to N-terminal peptide binding to HLA molecules.
- To characterize the molecular basis and immunological relevance of this reversed binding orientation.
Main Methods:
- Large-scale identification of peptides bound to HLA-DP molecules.
- Isolation and characterization of human cytomegalovirus (CMV)-specific CD4+ T cells.
- High-resolution crystal structure determination of an HLA-DP-peptide complex.
Main Results:
- Identification of reverse peptide binding motifs in 9 out of 14 HLA-DP allotypes, indicating C- to N-terminal binding.
- Demonstration that CMV-specific T cells recognize CMV peptides bound to HLA-DP in a reverse orientation.
- Elucidation of the molecular basis for C- to N-terminal peptide binding through crystal structure analysis.
Conclusions:
- HLA-DP molecules exhibit unique features allowing for C- to N-terminal peptide binding.
- This reversed binding orientation expands the repertoire of peptides presented by HLA class II molecules.
- The findings have implications for understanding immune responses against pathogens and cancer.
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