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Updated: Aug 19, 2025

Three-Dimensional Shape Modeling and Analysis of Brain Structures
Published on: November 14, 2019
TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models.
Rastko Ciric1,2, William H Thompson3,4,5, Romy Lorenz3,6,7
1Department of Psychology, Stanford University, Stanford, CA, USA. rastko@stanford.edu.
TemplateFlow is a new framework for sharing brain templates and atlases. It provides an open database and software to ensure resources are findable, accessible, interoperable, and reusable for neuroimaging research.
Area of Science:
- Neuroimaging
- Computational Neuroscience
- Brain Atlasing
Background:
- Standardized neuroimaging analysis relies on reference brain anatomies (templates) and atlases.
- Current methods for sharing these essential resources are fragmented, often bundled with software or available through informal downloads.
- Lack of a centralized registry hinders resource accessibility and reproducibility.
Purpose of the Study:
- Introduce TemplateFlow, a novel, publicly available framework for managing and distributing human and non-human brain models.
- Establish a standardized system for sharing brain templates and atlases.
- Promote FAIR data principles (Findable, Accessible, Interoperable, Reusable) for neuroimaging resources.
Main Methods:
- Development of an open-access database for brain templates and atlases.
- Creation of associated software for resource access, management, and quality control (vetting).
- Implementation of a framework supporting resource sharing under FAIR principles.
Main Results:
- TemplateFlow provides a unified platform for accessing diverse brain models across species.
- The framework facilitates "multiverse analyses" to test result generalizability across different references and scales.
- Ensures efficient and standardized access to crucial neuroimaging resources.
Conclusions:
- TemplateFlow addresses the critical need for a centralized, FAIR-compliant registry of brain templates and atlases.
- Enhances the reproducibility and standardization of neuroimaging research.
- Supports cross-species comparative studies and robust validation of neuroimaging findings.
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