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Updated: Aug 18, 2025

A Mass Spectrometry-Based Approach to Identify Phosphoprotein Phosphatases and their Interactors
Published on: April 29, 2022
Phosphorylation of PBX2, a novel downstream target of mTORC1, is determined by GSK3 and PP1
Reona Wada1, Shun Fujinuma1, Hirokazu Nakatsumi1
1Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan.
Abstract:
Mechanistic target of rapamycin complex 1 (mTORC1) is a serine-threonine kinase that is activated by extracellular signals, such as nutrients and growth factors. It plays a key role in the control of various biological processes, such as protein synthesis and energy metabolism by mediating or regulating the phosphorylation of multiple target molecules, some of which remain to be identified. We have here reanalysed a large-scale phosphoproteomics data set for mTORC1 target molecules and identified pre-B cell leukemia transcription factor 2 (PBX2) as such a novel target that is dephosphorylated downstream of mTORC1. We confirmed that PBX2, but not other members of the PBX family, is dephosphorylated in an mTORC1 activity-dependent manner. Furthermore, pharmacological and gene knockdown experiments revealed that glycogen synthase kinase 3 (GSK3) and protein phosphatase 1 (PP1) are responsible for the phosphorylation and dephosphorylation of PBX2, respectively. Our results thus suggest that the balance between the antagonistic actions of GSK3 and PP1 determines the phosphorylation status of PBX2 and its regulation by mTORC1.
Insights
Mechanistic target of rapamycin complex 1 (mTORC1) dephosphorylates pre-B cell leukemia transcription factor 2 (PBX2). This regulation involves glycogen synthase kinase 3 (GSK3) and protein phosphatase 1 (PP1), impacting PBX2 phosphorylation.
Area of Science:
- Cellular signaling
- Molecular biology
- Biochemistry
Background:
- Mechanistic target of rapamycin complex 1 (mTORC1) is a key kinase regulating cellular processes like protein synthesis and metabolism.
- mTORC1 activity is influenced by extracellular signals, including nutrients and growth factors.
- The precise phosphorylation targets of mTORC1 are not fully elucidated, necessitating further investigation.
Purpose of the Study:
- To identify novel target molecules regulated by mTORC1.
- To investigate the role of pre-B cell leukemia transcription factor 2 (PBX2) as a potential mTORC1 target.
- To elucidate the mechanisms controlling PBX2 phosphorylation status.
Main Methods:
- Reanalysis of large-scale phosphoproteomics data to identify mTORC1 targets.
- Confirmation of PBX2 dephosphorylation downstream of mTORC1 using biochemical assays.
- Pharmacological inhibition and gene knockdown experiments to identify kinases and phosphatases involved in PBX2 regulation.
Main Results:
- Pre-B cell leukemia transcription factor 2 (PBX2) was identified as a novel direct target of mTORC1, undergoing dephosphorylation.
- PBX2 dephosphorylation was confirmed to be dependent on mTORC1 activity.
- Glycogen synthase kinase 3 (GSK3) was identified as the kinase responsible for PBX2 phosphorylation, while protein phosphatase 1 (PP1) mediates its dephosphorylation.
Conclusions:
- The phosphorylation status of PBX2 is determined by the opposing activities of GSK3 and PP1.
- mTORC1 signaling regulates PBX2 phosphorylation through the modulation of GSK3 and PP1.
- These findings reveal a novel regulatory pathway for PBX2 within the mTORC1 signaling network.
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