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Published on: December 26, 2016
Differential Expression of RSK4 Transcript Isoforms in Cancer and Its Clinical Relevance
Sisi Chen1, Michael J Seckl1, Marc P G Lorentzen1
1Division of Cancer, Department of Surgery & Cancer, Hammersmith Campus, Imperial College London, London W12 0NN, UK.
Abstract:
While we previously revealed RSK4 as a therapeutic target in lung and bladder cancers, the wider role of this kinase in other cancers remains controversial. Indeed, other reports instead proposed RSK4 as a tumour suppressor in colorectal and gastric cancers and are contradictory in breast malignancies. One explanation for these discrepancies may be the expression of different RSK4 isoforms across cancers. Four RNAs are produced from the RSK4 gene, with two being protein-coding. Here, we analysed the expression of the latter across 30 normal and 33 cancer tissue types from the combined GTEx/TCGA dataset and correlated it with clinical features. This revealed the expression of RSK4 isoforms 1 and 2 to be independent prognostic factors for patient survival, pathological stage, cancer metastasis, recurrence, and immune infiltration in brain, stomach, cervical, and kidney cancers. However, we found that upregulation of either isoform can equally be associated with good or bad prognosis depending on the cancer type, and changes in the expression ratio of isoforms fail to predict clinical outcome. Hence, differential isoform expression alone cannot explain the contradictory roles of RSK4 in cancers, and further research is needed to highlight the underlying mechanisms for the context-dependent function of this kinase.
Insights
The role of RSK4 in cancer is complex, with different isoforms acting as either tumor suppressors or promoters. Isoform expression impacts patient survival and cancer progression across various cancer types.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- The role of ribosomal S6 kinase 4 (RSK4) in cancer is debated, with conflicting reports suggesting it can be a therapeutic target or a tumor suppressor.
- Discrepancies in RSK4's function across different cancers may stem from the expression of distinct RSK4 isoforms.
Purpose of the Study:
- To investigate the expression of protein-coding RSK4 isoforms (isoforms 1 and 2) across various cancer types.
- To correlate RSK4 isoform expression with clinical features and patient outcomes.
Main Methods:
- Analysis of RSK4 isoform expression in 30 normal and 33 cancer tissue types using the GTEx/TCGA dataset.
- Correlation of RSK4 expression with patient survival, pathological stage, metastasis, recurrence, and immune infiltration.
Main Results:
- RSK4 isoforms 1 and 2 are independent prognostic factors in brain, stomach, cervical, and kidney cancers.
- Upregulation of either RSK4 isoform can be associated with either favorable or unfavorable prognosis, depending on the cancer type.
- Changes in the ratio of RSK4 isoform expression do not reliably predict clinical outcomes.
Conclusions:
- Differential expression of RSK4 isoforms alone does not fully explain its context-dependent roles in cancer.
- Further research is required to elucidate the mechanisms underlying the varied functions of RSK4 in different cancer types.
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