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LeafJ: An ImageJ Plugin for Semi-automated Leaf Shape Measurement
Published on: January 21, 2013
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Plant leaf veins coupling feature representation and measurement method based on DeepLabV3.
Xiaobao Liu1, Biao Xu1, Wenjuan Gu1
1Faculty of Mechanical and Electrical Engineering, Kunming University of Science and Technology, Kunming, China.
Frontiers in Plant Science
|December 12, 2022
Summary
This study introduces an improved DeepLabV3+ model for plant leaf vein segmentation and measurement. The enhanced method achieves high accuracy and speed, overcoming challenges like occlusion and improving parameter measurement precision.
Area of Science:
- Computer Vision
- Plant Science
- Image Analysis
Background:
- Accurate segmentation and measurement of plant leaf veins are crucial for botanical research.
- Existing methods face challenges including slow processing, partial occlusion, and low measurement accuracy.
Purpose of the Study:
- To develop an efficient and accurate method for plant leaf vein segmentation and parameter measurement.
- To address limitations of current techniques in speed, occlusion handling, and precision.
Main Methods:
- Utilized DeepLabV3+ with MobileNetV2 as the feature extraction network for efficient segmentation.
- Implemented the Convex Hull-Scan method for leaf vein repair and a novel Floodfill MorphologyEx Medianblur Morphological Skeleton (F-3MS) algorithm for skeleton line refinement.
- Compressed network model parameters to reduce computational load.
Main Results:
- Achieved high segmentation accuracy with mean intersection over union (MIoU) of 81.50% and mean pixel accuracy (mPA) of 92.89%.
- Reached an average segmentation speed of 9.81 frames per second.
- Demonstrated high accuracy in measuring leaf vein length (96.3642%) and width (96.1358%) after significant model parameter compression (89.375%).
Conclusions:
- The proposed DeepLabV3+ based method significantly improves plant leaf vein segmentation and measurement.
- The optimized approach offers a balance of speed, accuracy, and efficiency for analyzing leaf vein structures.
- This technique provides a valuable tool for plant phenotyping and digital botany applications.
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