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Updated: Aug 16, 2025

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Modulation of RNA splicing enhances response to BCL2 inhibition in leukemia
Eric Wang1, Jose Mario Bello Pineda2, Won Jun Kim3
1The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Abstract:
Therapy resistance is a major challenge in the treatment of cancer. Here, we performed CRISPR-Cas9 screens across a broad range of therapies used in acute myeloid leukemia to identify genomic determinants of drug response. Our screens uncover a selective dependency on RNA splicing factors whose loss preferentially enhances response to the BCL2 inhibitor venetoclax. Loss of the splicing factor RBM10 augments response to venetoclax in leukemia yet is completely dispensable for normal hematopoiesis. Combined RBM10 and BCL2 inhibition leads to mis-splicing and inactivation of the inhibitor of apoptosis XIAP and downregulation of BCL2A1, an anti-apoptotic protein implicated in venetoclax resistance. Inhibition of splicing kinase families CLKs (CDC-like kinases) and DYRKs (dual-specificity tyrosine-regulated kinases) leads to aberrant splicing of key splicing and apoptotic factors that synergize with venetoclax, and overcomes resistance to BCL2 inhibition. Our findings underscore the importance of splicing in modulating response to therapies and provide a strategy to improve venetoclax-based treatments.
Insights
Researchers identified RNA splicing factors that improve cancer therapy response. Targeting these factors, like RBM10, enhances venetoclax effectiveness in leukemia by disrupting key cell survival proteins.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Therapy resistance is a significant obstacle in cancer treatment, particularly in acute myeloid leukemia (AML).
- Identifying genetic factors that influence drug response is crucial for developing more effective cancer therapies.
Purpose of the Study:
- To identify genomic determinants of drug response in acute myeloid leukemia (AML) using CRISPR-Cas9 screening.
- To uncover novel therapeutic strategies for overcoming resistance to BCL2 inhibitors like venetoclax.
Main Methods:
- CRISPR-Cas9 screening was employed across various AML therapies.
- Functional genomics and molecular assays were used to investigate the role of RNA splicing factors.
Main Results:
- Selective dependency on RNA splicing factors was identified, enhancing response to venetoclax.
- Loss of RBM10 specifically increased venetoclax sensitivity in leukemia without affecting normal blood cells.
- Combined inhibition of RBM10 and BCL2 led to XIAP inactivation and BCL2A1 downregulation, overcoming venetoclax resistance.
Conclusions:
- RNA splicing plays a critical role in modulating cancer therapy response.
- Targeting splicing factors, such as RBM10 or splicing kinases (CLKs, DYRKs), synergizes with venetoclax to improve AML treatment outcomes.
- This study provides a promising strategy to enhance venetoclax-based therapies for AML.
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