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Updated: Aug 16, 2025

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
A new class of CYP1B1 inhibitors derived from bentranil
Lan Yi1, Xinyue Huang2, Meixian Yang1
1Department of Radiation Medicine, College of Basic Medical Sciences, Chongqing Medical University, Chongqing 400016, China.
Abstract:
Cytochrome P450 1B1 (CYP1B1) is highly expressed in a variety of tumors and implicated to drug resistance. More and more researches have suggested that CYP1B1 is a new target for cancer prevention and therapy. Various CYP1B1 inhibitors with a rigid polycyclic skeleton have been developed, such as flavonoids, trans-stilbenes, and quinazolines. To obtain a new class of CYP1B1 inhibitors, we designed and synthesized a series of bentranil analogues, moreover, IC50 determinations were performed for CYP1B1 inhibition of five of these compounds and found that 6o and 6q were the best inhibitors, with IC50 values in the nM range. The selectivity index (SI) of CYP1B1 over CYP1A1 and CYP1A2 was 30-fold higher than that of α-naphthoflavone (ANF). The molecular docking results showed that compound 6q fitted better into the CYP1B1 binding site than other compounds, which was consistent with our experimental results. On the basis of 6o and 6q, it is expected to develop CYP1B1 inhibitors with stronger affinity, higher selectivity and better solubility.
Insights
Researchers developed novel bentranil analogues as potent inhibitors of Cytochrome P450 1B1 (CYP1B1), a key target in cancer therapy. Compounds 6o and 6q demonstrated significant CYP1B1 inhibition in the nanomolar range with high selectivity.
Area of Science:
- Biochemistry
- Medicinal Chemistry
- Oncology
Background:
- Cytochrome P450 1B1 (CYP1B1) is frequently overexpressed in various tumors, contributing to drug resistance.
- CYP1B1 is emerging as a promising molecular target for cancer prevention and therapeutic strategies.
- Existing CYP1B1 inhibitors often feature rigid polycyclic structures like flavonoids, trans-stilbenes, and quinazolines.
Purpose of the Study:
- To design and synthesize a novel class of CYP1B1 inhibitors based on bentranil analogues.
- To evaluate the inhibitory potential and selectivity of the synthesized compounds against CYP1B1.
- To investigate the binding interactions of the most potent inhibitors within the CYP1B1 active site.
Main Methods:
- Synthesis of a series of bentranil analogues.
- In vitro determination of IC50 values for CYP1B1 inhibition.
- Assessment of selectivity index (SI) against CYP1A1 and CYP1A2 compared to a known inhibitor (α-naphthoflavone).
- Molecular docking simulations to predict binding affinity and orientation within the CYP1B1 active site.
Main Results:
- Five synthesized bentranil analogues were tested for CYP1B1 inhibition.
- Compounds 6o and 6q exhibited potent CYP1B1 inhibition with IC50 values in the nanomolar (nM) range.
- The selectivity index (SI) for CYP1B1 over CYP1A1 and CYP1A2 for the novel compounds was significantly higher (30-fold) than that of α-naphthoflavone.
- Molecular docking studies indicated that compound 6q possessed superior binding within the CYP1B1 active site, aligning with experimental findings.
Conclusions:
- Bentranil analogues represent a promising new class of CYP1B1 inhibitors.
- Compounds 6o and 6q are identified as lead inhibitors with high potency and selectivity.
- Further development based on these lead compounds could yield novel cancer therapeutics with improved affinity, selectivity, and solubility.
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