Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

94
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
94
Diffusion01:12

Diffusion

194.5K
Diffusion is the passive movement of substances down their concentration gradients—requiring no expenditure of cellular energy. Substances, such as molecules or ions, diffuse from an area of high concentration to an area of low concentration in the cytosol or across membranes. Eventually, the concentration will even out, with the substance moving randomly but causing no net change in concentration. Such a state is called dynamic equilibrium, which is essential for maintaining overall...
194.5K
Maxwell-Boltzmann Distribution: Problem Solving01:20

Maxwell-Boltzmann Distribution: Problem Solving

1.6K
Individual molecules in a gas move in random directions, but a gas containing numerous molecules has a predictable distribution of molecular speeds, which is known as the Maxwell-Boltzmann distribution, f(v).
This distribution function f(v) is defined by saying that the expected number N (v1,v2) of particles with speeds between v1 and v2 is given by
1.6K
Behavior of Gas Molecules: Molecular Diffusion, Mean Free Path, and Effusion03:48

Behavior of Gas Molecules: Molecular Diffusion, Mean Free Path, and Effusion

29.2K
Although gaseous molecules travel at tremendous speeds (hundreds of meters per second), they collide with other gaseous molecules and travel in many different directions before reaching the desired target. At room temperature, a gaseous molecule will experience billions of collisions per second. The mean free path is the average distance a molecule travels between collisions. The mean free path increases with decreasing pressure; in general, the mean free path for a gaseous molecule will be...
29.2K
Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

74
Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
74
Two-Dimensional Force System: Problem Solving01:29

Two-Dimensional Force System: Problem Solving

640
Solving problems related to two-dimensional force systems is an essential aspect of mechanics and engineering. By applying the principles of vector analysis and force equilibrium, one can determine the effect of multiple forces acting on an object in a two-dimensional space.
The first step to solving a two-dimensional force system problem is to draw a free-body diagram of the object under consideration. This diagram helps identify all the external forces acting on the object, including their...
640

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Exploring the GM-CSF histidine triad as a modulator of structure, molecular motion, and ligand binding.

RSC chemical biology·2026
Same author

Reducing the Cost of Unitary Coupled Cluster via Active Space Partitioning.

Journal of chemical theory and computation·2026
Same author

Modeling stochastic chemical kinetics on quantum computers.

The Journal of chemical physics·2026
Same author

Lubricin's Mucin Domain Has Strong Polyproline Type II Helical Character.

Computational and structural biotechnology journal·2026
Same author

ΦX174 bacteriophage viability predicted by protein biophysical modeling.

bioRxiv : the preprint server for biology·2026
Same author

Identifying Band Inversions in Topological Materials Using Diffusion Monte Carlo.

Journal of chemical theory and computation·2025
Same journal

Kinetic and Mechanistic Insights into H-Abstraction and Subsequent Isomerization and Decomposition of Monoglyme and Key Combustion Intermediates.

The journal of physical chemistry. A·2026
Same journal

First-Principles Analysis of Protonation-Induced Electronic Effects in Tetrakis(<i>p</i>-aminophenyl)porphyrin (TAPP).

The journal of physical chemistry. A·2026
Same journal

Exploring the Reactivity of the CH Radical toward Nitrous Oxide in the Context of the Interstellar Medium.

The journal of physical chemistry. A·2026
Same journal

Infrared Photodissociation Spectroscopy of Benzene-V<sup>+</sup>(CO)<sub>n</sub> "Piano Stool" Cations.

The journal of physical chemistry. A·2026
Same journal

Correction to "Solvent-Dependent Ultrafast Photochemical Dynamics of <i>N</i>-Methyl Oxindole Overcrowded Alkene Molecular Motors".

The journal of physical chemistry. A·2026
Same journal

Accelerating the Discovery of Superhalogens via Physics-Informed Graph Neural Networks.

The journal of physical chemistry. A·2026
See all related articles

Related Experiment Video

Updated: Aug 15, 2025

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules
10:20

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules

Published on: September 5, 2019

8.3K

Machine Learning Diffusion Monte Carlo Forces.

Cancan Huang1, Brenda M Rubenstein1

  • 1Department of Chemistry, Brown University, Providence, Rhode Island02912, United States.

The Journal of Physical Chemistry. A
|December 28, 2022
PubMed
Summary
This summary is machine-generated.

Machine learning DMC forces from energy calculations enables accurate molecular dynamics and geometry optimization. This approach significantly reduces computational cost while maintaining high accuracy for molecular properties.

More Related Videos

Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy
12:15

Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy

Published on: April 9, 2019

8.8K
Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
06:37

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package

Published on: September 17, 2021

4.6K

Related Experiment Videos

Last Updated: Aug 15, 2025

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules
10:20

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules

Published on: September 5, 2019

8.3K
Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy
12:15

Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy

Published on: April 9, 2019

8.8K
Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
06:37

Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package

Published on: September 17, 2021

4.6K

Area of Science:

  • Computational chemistry
  • Quantum mechanics
  • Materials science

Background:

  • Diffusion Monte Carlo (DMC) offers high accuracy for electronic properties but is computationally expensive for force calculations.
  • Calculating forces with DMC is a bottleneck for ab initio molecular dynamics and geometry optimizations.

Purpose of the Study:

  • To develop a machine learning approach for accurately predicting "DMC forces" from DMC energy calculations.
  • To enable efficient molecular dynamics simulations and geometry optimizations using high-accuracy DMC potential energy surfaces.

Main Methods:

  • Utilized Behler-Parrinello Neural Networks to learn DMC forces from DMC energy data.
  • Compared machine learning models trained on various datasets (DFT energies with/without forces, DMC energies without forces).
  • Performed rigorous comparisons of potential energy surfaces, dynamics, and optimization predictions.

Main Results:

  • Machine-learned DMC dynamics accurately reproduced average bond lengths and angles for C2, H2O, and CH3Cl within a few percent of experimental values.
  • Achieved results at approximately one hundredth of the computational cost of traditional methods.
  • Demonstrated the feasibility of learning forces from noisy energy data without explicit force information.

Conclusions:

  • Machine learning provides a viable and cost-effective method for performing dynamics simulations on high-accuracy DMC potential energy surfaces.
  • This technique facilitates the generation of DMC-quality molecular geometries, overcoming current algorithmic limitations.